BS20778.complete Sequence
524 bp assembled on 2011-01-18
GenBank Submission: KX803938
> BS20778.complete
GAAGTTATCAGTCGACATGGTTTACGAAAGTGGATTTACGACCCGCAGAA
CCTACTCCTCGAGGCCGGTGACAACTTCCTACGCAGTTACGAGAACGAAG
AGAACACCAATTGACTGGGAGAAAGTTCCGTTCGTGCCGCGGCCGTCGCT
CATCTCGGATCCGGTGACCGCCTTCGGAGTGCGGCGTCCCGATCTCGAGC
GGCGCCAGCGGTCGATCCTCGATCCGATCAATCGGGCCTCCATCAAGCCC
GACTACAAGCTGGCCTACGAGCCCATTGAGCCGTATGTCTCCACCCGGGA
CAAGAACCGGACGCGGATCCTGGGCATGGTGCGCCAGCACATCGACACCG
TGGAGGCGGGTGGCAATACCGCCGGCCGCACCTTCCGCGACAGTCTGGAC
GCCCAGCTGCCGCGACTCCATCGCGCCGTCTCCGAGTCCTTGCCAGTTCG
CCGGGAGACCTACCGCAACGAGAGGTCGGGCGCGATGGTCACCAAGTACT
CCTACTAGAAGCTTTCTAGACCAT
BS20778.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:12:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG45078-RA | 492 | CG45078-PA | 1..492 | 17..508 | 2460 | 100 | Plus |
| fau-RA | 396 | CG45077-PA | 1..76 | 17..92 | 380 | 100 | Plus |
| CG45076-RI | 1032 | CG45076-PI | 1..75 | 17..91 | 375 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:12:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG45078-RA | 1925 | CG45078-RA | 122..615 | 15..508 | 2470 | 100 | Plus |
| fau-RA | 1020 | CG45077-RA | 122..199 | 15..92 | 390 | 100 | Plus |
| CG45076-RI | 2109 | CG45076-RI | 122..198 | 15..91 | 385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:11:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10774649..10775066 | 508..91 | 2090 | 100 | Minus |
| 3R | 32079331 | 3R | 10777177..10777253 | 91..15 | 385 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:12:00 has no hits.
BS20778.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:39:07 Download gff for
BS20778.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fau-RB | 118..609 | 17..508 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:50:13 Download gff for
BS20778.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fau-RB | 124..615 | 17..508 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:58:25 Download gff for
BS20778.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG45078-RA | 124..615 | 17..508 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:58:25 Download gff for
BS20778.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10774649..10775065 | 92..508 | 100 | <- | Minus |
| 3R | 10777177..10777251 | 17..91 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:50:13 Download gff for
BS20778.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6600371..6600787 | 92..508 | 100 | <- | Minus |
| arm_3R | 6602899..6602973 | 17..91 | 100 | | Minus |
BS20778.pep Sequence
Translation from 16 to 507
> BS20778.pep
MVYESGFTTRRTYSSRPVTTSYAVTRTKRTPIDWEKVPFVPRPSLISDPV
TAFGVRRPDLERRQRSILDPINRASIKPDYKLAYEPIEPYVSTRDKNRTR
ILGMVRQHIDTVEAGGNTAGRTFRDSLDAQLPRLHRAVSESLPVRRETYR
NERSGAMVTKYSY*
BS20778.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:02:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG45078-PA | 163 | CG45078-PA | 1..163 | 1..163 | 842 | 100 | Plus |
