BS20779.complete Sequence
1337 bp assembled on 2011-01-18
GenBank Submission: KX806406
> BS20779.complete
GAAGTTATCAGTCGACATGCCCTTGGAAGAGAAGGAAGTTGAGTACTTTT
TCGCATCGGACGCCTCAGCCGTCATAGAGCACACTAACCGGGTCATCTAT
TTGGAGGACGACGATGTTGCTGCTGTTCGGGATGGAACTTTGAGTATACA
TCGCCTAAAGAAGAGCCTGGATGATCCGCACGCTCGCGAAATCACTACCC
TAAAAATGGAAATTCAACAGATCATGAAGGGAAACTATGACTATTTTATG
CAAAAGGAGATTTTCGAGCAGCCCGACTCCGTGGTGAACACAATGCGCGG
TCGCGTCCGCTTCGATGGTAACGCCATAGTGCTCGGCGGGATCAAAGACT
ACATTCCTGAAATCAAACGCTGTCGACGCCTGATGTTGATTGGATGTGGC
ACATCTTACCACAGCGCTGTAGCCACTAGGCAGCTGCTCGAAGAACTCAC
AGAGCTTCCCGTGATGGTTGAGCTGGCTTCCGACTTTTTAGACCGAAACA
CTCCTATTTTTCGAGACGACGTCTGCTTTTTTATATCGCAGTCCGGAGAG
ACTGCCGACACCCTGATGGCCTTACGTTACTGTAAGCAGCGAGGAGCCCT
GATTGTGGGCATTACGAATACCGTAGGCAGCAGCATATGTCGGGAATCGC
ATTGTGGAGTGCACATTAATGCCGGACCAGAGATAGGCGTGGCCTCGACC
AAGGCATACACCTCCCAATTCATTTCCCTGGTGATGTTCGCTCTAGTTAT
GTCCGAAGATCGACTGTCACTGCAACAGCGACGGCTTGAGATTCTGCAGG
CGTTGTCCAAGCTCGCGGATCAAATCCGAGACGTTCTGCAGCTGGACTCC
AAAGTTAAAGAACTGGCCAAAGACCTATACCAACACAAGTCGCTTCTGAT
AATGGGTAGGGGCTACAACTTTGCCACTTGCCTAGAAGGTGCATTGAAAG
TCAAAGAGTTGACTTACATGCACAGCGAGGGCATCATGGCCGGTGAATTG
AAGCACGGCCCACTGGCTCTCGTAGACGACTCCATGCCCGTGCTGATGAT
TGTTTTGCGGGACCCCGTTTACGTAAAGTGCATGAACGCTCTACAGCAGG
TCACATCCCGCAAAGGATGCCCGATTATTATCTGCGAGGAGGGAGACGAG
GAGACCAAGGCTTTCTCCTCCCGCCATCTAGAGATTCCTCGCACCGTCGA
CTGCCTGCAAGGAATTCTCACCGTTATCCCAATGCAACTACTGTCTTATC
ATATTGCCGTGCTTCGCGGATGCGACGTTGACTGTCCTAGAAACTTAGCA
AAGTCTGTGACAGTTGAGTAAAAGCTTTCTAGACCAT
BS20779.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:12:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gfat1-RH | 2058 | CG12449-PH | 754..2058 | 17..1321 | 6525 | 100 | Plus |
| Gfat1-RD | 2022 | CG12449-PD | 718..2022 | 17..1321 | 6525 | 100 | Plus |
| Gfat1-RF | 1305 | CG12449-PF | 1..1305 | 17..1321 | 6525 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:12:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gfat1-RH | 2601 | CG12449-RH | 1109..2414 | 17..1322 | 6530 | 100 | Plus |
| Gfat1-RD | 2363 | CG12449-RD | 871..2176 | 17..1322 | 6530 | 100 | Plus |
| Gfat1-RF | 2290 | CG12449-RF | 798..2103 | 17..1322 | 6530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:12:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4136419..4137260 | 105..946 | 4210 | 100 | Plus |
| 3R | 32079331 | 3R | 4137319..4137695 | 946..1322 | 1885 | 100 | Plus |
| 3R | 32079331 | 3R | 28338036..28338787 | 780..32 | 1235 | 77.9 | Minus |
| 3R | 32079331 | 3R | 28337294..28337668 | 1320..946 | 570 | 76.8 | Minus |
| 3R | 32079331 | 3R | 4135292..4135382 | 17..107 | 455 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:12:04 has no hits.
BS20779.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:39:08 Download gff for
BS20779.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gfat1-RL | 896..2198 | 17..1319 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:50:14 Download gff for
BS20779.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gfat1-RF | 798..2100 | 17..1319 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:58:28 Download gff for
BS20779.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gfat1-RF | 798..2100 | 17..1319 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:58:28 Download gff for
BS20779.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4136421..4137260 | 107..946 | 100 | -> | Plus |
| 3R | 4135292..4135381 | 17..106 | 100 | -> | Plus |
| 3R | 4137320..4137692 | 947..1319 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:50:14 Download gff for
BS20779.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3RHet | 2479058..2479147 | 17..106 | 100 | -> | Plus |
| 3RHet | 2480187..2481026 | 107..946 | 100 | -> | Plus |
| 3RHet | 2481086..2481458 | 947..1319 | 100 | | Plus |
BS20779.pep Sequence
Translation from 16 to 1320
> BS20779.pep
MPLEEKEVEYFFASDASAVIEHTNRVIYLEDDDVAAVRDGTLSIHRLKKS
LDDPHAREITTLKMEIQQIMKGNYDYFMQKEIFEQPDSVVNTMRGRVRFD
GNAIVLGGIKDYIPEIKRCRRLMLIGCGTSYHSAVATRQLLEELTELPVM
VELASDFLDRNTPIFRDDVCFFISQSGETADTLMALRYCKQRGALIVGIT
NTVGSSICRESHCGVHINAGPEIGVASTKAYTSQFISLVMFALVMSEDRL
SLQQRRLEILQALSKLADQIRDVLQLDSKVKELAKDLYQHKSLLIMGRGY
NFATCLEGALKVKELTYMHSEGIMAGELKHGPLALVDDSMPVLMIVLRDP
VYVKCMNALQQVTSRKGCPIIICEEGDEETKAFSSRHLEIPRTVDCLQGI
LTVIPMQLLSYHIAVLRGCDVDCPRNLAKSVTVE*
BS20779.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:02:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gfat1-PH | 685 | CG12449-PH | 252..685 | 1..434 | 2215 | 100 | Plus |
| Gfat1-PD | 673 | CG12449-PD | 240..673 | 1..434 | 2215 | 100 | Plus |
| Gfat1-PF | 434 | CG12449-PF | 1..434 | 1..434 | 2215 | 100 | Plus |
| Gfat1-PA | 694 | CG12449-PA | 261..694 | 1..434 | 2215 | 100 | Plus |
| Gfat1-PN | 694 | CG12449-PN | 261..694 | 1..434 | 2215 | 100 | Plus |
