BS20781.complete Sequence
1793 bp assembled on 2011-02-17
GenBank Submission: KX801610
> BS20781.complete
GAAGTTATCAGTCGACATGATGGAGTTCGGGAAATCGTCGGATCACTCCC
AGCACAGCGCTTCCGAGGCGTCGGCGGACTCCGGCAGCCTGGCAAACAGC
GATCTGGCCGTCACGCCCACCAAGCGGGAGCGCCGCAAGTCGCCGGCCAC
CAGTTCGGACAACAACAGCACCAGCGTCCAACCGCCAATGTCGCCGTCGT
CCTCGGTGGCGGACACCACCTTTGAGCCCACCATCGACATGATGGTCAAC
GACTTTGACGACGAGGCCACGCTGAACGAGGAGGAGGCTCTGGCGGACAT
GGAGGCGCACAGTGCCGAGGACGAGATCGCCACGCTGCGCGAGGAGAGCG
AGATGCCCATCGAGGAGCTGCTGGCCAAATATGGCGGGACAGCGGCTTCG
CCGGCAATGAGCAGCTCGAACCGTTCCGGCAGCAGTTCACGACGTGCACG
TAGGGCCACAAAGCGCCAGTACCAGGAACTGGACACGGAGATGGCTCACA
CGTCGACCTCCACTTCGAGCAGCACATCGCAACTGGAGAAACACGACGGC
ATAGACCAGGAGGAGGAACCCAAGGAGGAGGCCGATAAGCTAGCATCACC
CCCAGAATCAGGAGAAGCTTCGTCCGTGGACACGGAGGATGCGCAAAAGT
ATGAGGGGATCAAGAAGCAGCATCGCTCACATTTGCTGGACCTGTATCCA
GATGAATCCTTCGTCGATCTGGCGCCCACATGCGGAGAGGAGACGGAAAG
ATTCACTCCACTGCAAACACTGTTCGATGAAGTGGAGGCCGAGGAGGAGG
AGGAAAGCGAATCCGAGTTGGACGATGCTCGGAAGATAATAATGGTGGGT
CACGACTATCAGGCTGAGATCCCAGAGGGGCTGTCGCAATATGGCGATAT
ATTGCCATATGAGAACGAGGATCAGTTGATCTGGGAGCCCAGCCAAGTCA
GCGAGCGCGAGGTGGAGGAATATCTGGCCAAGATACAGGAAACCCGATCG
ATAGTTCCGCCGGATGACGGGTCAGAGACTACGGCGGGCGAGGAAGGCGC
AGCTACAGGTGCTACTATCGAACCGCCGGCTCCCATTACAGCTCCAGCCA
CGCCTCCGAGGGCTCCGCTTGCGACAAGTGGCGCTGGCGATCAGGAGCTG
GTGGTAAAGGATAATGAGCAGGCGCTCCATCTGCTTGTCCAGTGCGGTTA
CGACTTCAAAGAAGCCCTACGACGCAAGCGCATGAACGTCCTGCCTCTCA
CTGATACCATGAGCAGCTGGTCCGAGGACGAGTGCCTAAAGTTCGAGGAG
GGCATTCAGCGGTTTGGCAAGGACTTCTATCAGATACGTCAAAACCAGGT
GCGCACTAGAACCATGCGCGAGCTGGTCCATTTCTACTATCTGTGGAAGA
AGAGTGAGCGCCGGGATCAGAGCTTTGCTTTAAACGACACCATCGATCAC
ATGGATGTTTTCATCAACGAGGCGGGCGGTGGCAACGGAAGTGGTAATGG
AAATGGTGCCGGGATCGTATCGGGCACCGCTAACAGTAATGGTAGCTGCT
CACCGCATAGCAGCAATGGTCACAGCAATGGGGATTTGTCTGCCCTGGAG
AAGGATACCATCGCCAGTCCTCGAAAACCCGCCTCTAAGAGCTATTCTAT
TATGACCGGGAGTCAGGCGGTAGGTAATCCTTCCGGGGGGAACCGAAAGC
GATGCTCATCCGCATCTCTGCCCCTGGAGGACGAGGACAACAACGTCGAG
GAAGAACCCAGCCTGTCCACAGTGTAAAAGCTTTCTAGACCAT
BS20781.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:48:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1620-RC | 1761 | CG1620-PC | 1..1761 | 17..1777 | 8805 | 100 | Plus |
| CG1620-RA | 1761 | CG1620-PA | 1..1761 | 17..1777 | 8805 | 100 | Plus |
| CG1620-RB | 1374 | CG1620-PB | 1..1334 | 17..1350 | 6670 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:48:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1620-RC | 2204 | CG1620-RC | 87..1848 | 17..1778 | 8810 | 100 | Plus |
| CG1620-RA | 2529 | CG1620-RA | 206..1967 | 17..1778 | 8810 | 100 | Plus |
| CG1620-RB | 2272 | CG1620-RB | 87..1420 | 17..1350 | 6670 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:48:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7495526..7496261 | 752..17 | 3680 | 100 | Minus |
| 2R | 25286936 | 2R | 7494864..7495461 | 1350..753 | 2990 | 100 | Minus |
| 2R | 25286936 | 2R | 7494368..7494800 | 1778..1346 | 2165 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:48:08 has no hits.
BS20781.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:41:28 Download gff for
BS20781.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1620-RA | 206..1964 | 17..1775 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:54:41 Download gff for
BS20781.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1620-RA | 206..1964 | 17..1775 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:54:46 Download gff for
BS20781.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1620-RA | 206..1964 | 17..1775 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:54:46 Download gff for
BS20781.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7494371..7494797 | 1349..1775 | 100 | <- | Minus |
| 2R | 7494866..7495461 | 753..1348 | 100 | <- | Minus |
| 2R | 7495526..7496261 | 17..752 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:54:41 Download gff for
BS20781.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3381876..3382302 | 1349..1775 | 100 | <- | Minus |
| arm_2R | 3382371..3382966 | 753..1348 | 100 | <- | Minus |
| arm_2R | 3383031..3383766 | 17..752 | 100 | | Minus |
BS20781.pep Sequence
Translation from 16 to 1776
> BS20781.pep
MMEFGKSSDHSQHSASEASADSGSLANSDLAVTPTKRERRKSPATSSDNN
STSVQPPMSPSSSVADTTFEPTIDMMVNDFDDEATLNEEEALADMEAHSA
EDEIATLREESEMPIEELLAKYGGTAASPAMSSSNRSGSSSRRARRATKR
QYQELDTEMAHTSTSTSSSTSQLEKHDGIDQEEEPKEEADKLASPPESGE
ASSVDTEDAQKYEGIKKQHRSHLLDLYPDESFVDLAPTCGEETERFTPLQ
TLFDEVEAEEEEESESELDDARKIIMVGHDYQAEIPEGLSQYGDILPYEN
EDQLIWEPSQVSEREVEEYLAKIQETRSIVPPDDGSETTAGEEGAATGAT
IEPPAPITAPATPPRAPLATSGAGDQELVVKDNEQALHLLVQCGYDFKEA
LRRKRMNVLPLTDTMSSWSEDECLKFEEGIQRFGKDFYQIRQNQVRTRTM
RELVHFYYLWKKSERRDQSFALNDTIDHMDVFINEAGGGNGSGNGNGAGI
VSGTANSNGSCSPHSSNGHSNGDLSALEKDTIASPRKPASKSYSIMTGSQ
AVGNPSGGNRKRCSSASLPLEDEDNNVEEEPSLSTV*
BS20781.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:17:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1620-PC | 586 | CG1620-PC | 1..586 | 1..586 | 3010 | 100 | Plus |
| CG1620-PA | 586 | CG1620-PA | 1..586 | 1..586 | 3010 | 100 | Plus |
| CG1620-PB | 457 | CG1620-PB | 1..450 | 1..450 | 2278 | 99.1 | Plus |
| MTA1-like-PB | 844 | CG2244-PB | 196..481 | 275..567 | 203 | 23.1 | Plus |
| MTA1-like-PC | 853 | CG2244-PC | 205..490 | 275..567 | 203 | 23.1 | Plus |
