BS20782.complete Sequence
893 bp assembled on 2011-01-18
GenBank Submission: KX803352
> BS20782.complete
GAAGTTATCAGTCGACATGAACCTCGAGCAGCAGGGGATGGATCCGCAAG
GGGTGGAAAACCAGCAGGAAATCGTCCAGGCAGCCGAAGGAGAACAGCAG
TTGCAAAGTTGCTGTAAGGTCTTCAAAATGAAGGGATCGACGCTGGACAA
AATCTCCGCCTTCCTCGGCGAGCTCATCGGCACCGGCATCCTGGTCTTCC
TGGGCTGCATGGGTTGCGTGAAGACGGACCTCTTTCCCAACAACCATCTG
CAGATTGTGCTGAACTTCGGCTTCGCCGTCCTCATCGCCATCCAGTGCTT
TGGCTGCGTCTCCGGTGCCCATCTGAATCCCGCCGTGACCGTGGCCGCCT
ACATCTACGAGATGGTCACCCTGCGCATGGCATTTGCCTACTTCGCCGCC
CAGATGCTGGGCGCCTTCATCGGCTACGGCCTGCTCATGGTCCTGCTTCC
CTCGCCCACACTTACGGTGGGCGCTGGGCTCTGCGTGACCTTGCCCCACA
CCAGCGTAACCACGGGCCAGGCCCTCGGCATCGAGTTCGTAATCACCTCC
ATCCTGGTCATCGTCTGCTGCGGAGTGTGGGATCCGCGCAACTCCAAGTT
CCATGACTCCGTGGGCATTCGATTTGGCCTGGCCATCGCCTGTCTCGCCT
GCGCTGCCGGTCCCTTCACCGGCGGCAGCATGAACCCGGCCAGGTCGTTC
GCCCCCGCCCTGTGGAACAAGCACTTCGAGAGCAACTGGATCTACTGGCT
GGCCCCGCTGAGCTCCTCCGCCATCACCGCCTACGCCTACAAGGTCGTCT
TCCGCCGCGAGGTGGTTGAGGCGGAGATCACCTCCAATGAGAAGCTGCGG
CAACTGGAGGACGTCCAGCTGTCGTAAAAGCTTTCTAGACCAT
BS20782.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:12:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4019-RE | 861 | CG4019-PE | 1..861 | 17..877 | 4305 | 100 | Plus |
| CG4019-RF | 894 | CG4019-PF | 124..894 | 107..877 | 3855 | 100 | Plus |
| CG4019-RC | 786 | CG4019-PC | 17..786 | 108..877 | 3850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:12:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4019-RE | 1183 | CG4019-RE | 82..942 | 17..877 | 4305 | 100 | Plus |
| CG4019-RF | 1271 | CG4019-RF | 260..1030 | 107..877 | 3855 | 100 | Plus |
| CG4019-RD | 1128 | CG4019-RD | 117..887 | 107..877 | 3855 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:12:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23608131..23608683 | 659..107 | 2765 | 100 | Minus |
| 2R | 25286936 | 2R | 23607833..23608051 | 877..659 | 1095 | 100 | Minus |
| 2R | 25286936 | 2R | 23608931..23609022 | 108..17 | 460 | 100 | Minus |
| 2R | 25286936 | 2R | 23604625..23604800 | 435..260 | 400 | 81.8 | Minus |
| 2R | 25286936 | 2R | 23606358..23606443 | 350..265 | 205 | 82.6 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:12:09 has no hits.
BS20782.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:39:08 Download gff for
BS20782.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4019-RD | 78..846 | 107..875 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:50:17 Download gff for
BS20782.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4019-RE | 82..940 | 17..875 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:58:31 Download gff for
BS20782.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4019-RE | 82..940 | 17..875 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:58:31 Download gff for
BS20782.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23607835..23608051 | 659..875 | 100 | <- | Minus |
| 2R | 23608132..23608681 | 109..658 | 100 | <- | Minus |
| 2R | 23608931..23609022 | 17..108 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:50:17 Download gff for
BS20782.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19495358..19495574 | 659..875 | 100 | <- | Minus |
| arm_2R | 19495655..19496204 | 109..658 | 100 | <- | Minus |
| arm_2R | 19496454..19496545 | 17..108 | 100 | | Minus |
BS20782.pep Sequence
Translation from 16 to 876
> BS20782.pep
MNLEQQGMDPQGVENQQEIVQAAEGEQQLQSCCKVFKMKGSTLDKISAFL
GELIGTGILVFLGCMGCVKTDLFPNNHLQIVLNFGFAVLIAIQCFGCVSG
AHLNPAVTVAAYIYEMVTLRMAFAYFAAQMLGAFIGYGLLMVLLPSPTLT
VGAGLCVTLPHTSVTTGQALGIEFVITSILVIVCCGVWDPRNSKFHDSVG
IRFGLAIACLACAAGPFTGGSMNPARSFAPALWNKHFESNWIYWLAPLSS
SAITAYAYKVVFRREVVEAEITSNEKLRQLEDVQLS*
BS20782.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:02:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4019-PE | 286 | CG4019-PE | 1..286 | 1..286 | 1488 | 100 | Plus |
| CG4019-PF | 297 | CG4019-PF | 42..297 | 31..286 | 1337 | 100 | Plus |
| CG4019-PC | 261 | CG4019-PC | 7..261 | 32..286 | 1333 | 100 | Plus |
| CG4019-PB | 249 | CG4019-PB | 1..249 | 38..286 | 1295 | 100 | Plus |
| CG4019-PD | 249 | CG4019-PD | 1..249 | 38..286 | 1295 | 100 | Plus |
