BS20783.complete Sequence
2780 bp assembled on 2011-02-17
GenBank Submission: KX803103
> BS20783.complete
GAAGTTATCAGTCGACATGGGCTGCACTATGATGCGCAAGTGTCACTTGA
ACACCTGTCCCGTGGGCATTGCCACCCAGGATCCGGAGCTGCGCAAGAAG
TTCACGGGTAAACCAGAGCATGTTATCAACTTCTTCTTCATGCTGGCCGA
GGATATTCGCAAAATTATGGCTGGATTGGGCATTCGAAAGTTCCAGGATC
TGATTGGTCGCACCGATTTATTGCGCGTGGCCAGTCAACGCGATGCCAAG
GCTAGTAACCTGGACCTCAAGTTGCTCCTGCAGCCAGCTTTGGAACTGCG
TCCCGGCACGAACATCGTTGGAGGTTCCGTAAAGCAGGACTTCCAGCTGG
AGAAGCGTTCCGACAACGAACTAATTGCCAAGGCTCAGCAAATATTCAGT
GGAGCAGACGATAATGTAACCGTCAAGATGCGCATCCACAATGAGGAGCG
AGCCTTTGGTTCTACTCTGAGCTATCATATTGCATGCAAATATGGAGAGG
CTGGCTTGCCCGCTGGCAAGAGCATCGACATCTTCCTGGAGGGTTCCGCT
GGTCAGAGCTTCTGCGCGTTCCTGGCGCGGGGTGTTAATGTGACATTGAA
GGGCGATGCCAACGATTATGTGGGCAAGGGTCTTTGCGGTGGTAATGTTG
TCATCATGCCACAAGATACGGTTCCCTTCGAATCACATCTCAATGTTATC
GTGGGCAACGTTTGCTTGTATGGAGCCACTGAGGGAACTGCCTATTTCCG
CGGTATTGCCTCCGAACGCTTCTGCGTACGAAACTCTGGTGTAACCGCCG
TTGTTGAAGGTGTGGGCGATCACGGATGTGAATACATGACTGGCGGTGTA
GTGGTTATCCTCGGTCTTACGGGACGAAACTTCGCCGCTGGCATGTCCGG
CGGTATTGCTTATGTGTACGATTTAGATGGTTCCTTTAAGCCCAAGGTAA
ACCCGGAAAGTGTGGAACTCCTGCCGTTGGAAATTGAGAAGGATGTGCTG
CTCGTCAAGGAACTGTTGGCTGATTTCATTGAGAAGACAGGCTCGAAGGT
GGCCAAGGAGTTGCTTGACAACTGGGCCGAAGCCCAGGGCAAGTTTGTCA
AGGTCTTCCCGTATGAATACCAAAAGGCTCTAAAGGACATGGCCGAACAA
CAAGCAGTGGAGCAGCCCCTGAAGTCCGCCATCGAGAATGGAAACGGAAA
GCATGAACCGCACATCAAGGACATTGAGGAAGCGATTCAGGACGTGGTGC
TCGAGCAGAAGCGTGCCGATCGCGTCCTGGACAAGACCCGTGGCTTTGTA
AAGTACAAGAGGGAATCGGCTCCGTACCGAGATGCTGGAGAGCGACAGAA
GGATTGGGATGAAGTCTACAACTTCCCACATGTGCGCAAGAACCTCAAGG
TTCAAGCAGCTCGATGCATGGAATGCGGTGTGCCCTTCTGTCAGTCCAAC
TCCACGGGCTGTCCGCTCGGTAACATCATTCCCAAGTGGAACGACCTCGT
TTTCCACGGCGAGTGGCAGGAGGCTCTGCGTCAACTGCTGCAGACCAACA
ACTTCCCGGAGTTCACTGGTCGAGTATGCCCCGCTCCCTGCGAGGGTTCC
TGCGTTTTGGGCATCTCCGAGCCAGCTGTAACGATCAAGAACATCGAATG
CGCCATCATCGATCATGCCTTCGAGCAGGGCTGGATTAAGCCAGAGATTC
CGGAAGTGCGCACTGGCAAACGAGTTGCGATTGTGGGATCAGGACCTTCC
GGCTTGGCCGCCTCGCAGCAGCTGAACCGCGCCGGTCACTTTGTCACCGT
TTTTGAGCGCAACGATCGCGTTGGTGGACTTTTGCAGTATGGTATTCCCA
CGATGAAGCTTTCCAAGGAGGTGGTCAAGCGGCGGGTAGATCTGATGGCT
GACGAGGGTATCGAGTTCCGCACCAATGTCCATGTGGGCAAGGACCTCAA
GGCCGAGCAACTGCTGCAGGAGTATGATGCCGTCCTCCTCACCACTGGCT
CCACCTGGCCACGTGACTTGCCGCTCGCCAACCGTGACCTGAAGGGCATT
CACTTTGCCATGGAATTCCTGGAGGCGCAGCAGAAGAAGCAGCTGGGCGG
AAAGAATGATATAATATCTGCCGCTGGCAAGAATGTGATCATCATCGGCG
GTGGCGATACCGGATGCGATTGCATTGCCACGTCGTTGCGTCAAGGCGCC
AAGAGTATCACTACATTCGAGATCCTTCCGGAACCGCCACAGAAGCGTGC
TCAGGACAACCCCTGGCCTCAGTGGCCGAAGGTCTTCCGCGTGGACTACG
GTCACGAGGAGGTGAAGCTGAAGTGGGGCAAAGATCCGCGCCAGTACTGC
ACCACCACCAAGGAGTTCGTGGGCGAAAATGGAGCCATCAAGGGCGTGAA
CACCGTCGAGGTTGAGTGGACCAAGACGGAAACGGGCCAGTGGCGCATGC
AGGAGGTGGCCGGTTCGGAGAAGTACTTCCCCGCAGACCTTATTCTCCTG
GCCATGGGCTTCCTGGGTCCGGAGAAGACGGTGCCGAGCGAACTGGGCCT
GGAGCTGGACCCGCGCGGCAACATCAAGGCATCCAACGGACAGTATGGCA
CCTCGAACTCCAAGGTCTTTGCGGCAGGAGATTGCCGGCGTGGCCAGTCG
CTGGTCGTCTGGGCCATTACCGAGGGTCGCCAGGCCGCACGACAGGTCGA
TTCCTATCTGACCGGCCGTCCCAGTGGGCTTCCAGGACCTGGTGGCGTCA
TCGCGACATCCTAAAAGCTTTCTAGACCAT
BS20783.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:48:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9674-RG | 6348 | CG9674-PG | 3596..6348 | 12..2764 | 13750 | 100 | Plus |
| CG9674-RF | 6348 | CG9674-PF | 3596..6348 | 12..2764 | 13750 | 100 | Plus |
| CG9674-RD | 6345 | CG9674-PD | 3593..6345 | 12..2764 | 13750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:48:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9674-RH | 7274 | CG9674-RH | 4361..7114 | 12..2765 | 13755 | 100 | Plus |
| CG9674-RG | 7436 | CG9674-RG | 3847..6600 | 12..2765 | 13755 | 100 | Plus |
| CG9674-RF | 7465 | CG9674-RF | 3876..6629 | 12..2765 | 13755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:48:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16789456..16790944 | 1974..486 | 7445 | 100 | Minus |
| 3L | 28110227 | 3L | 16788662..16789320 | 2630..1972 | 3295 | 100 | Minus |
| 3L | 28110227 | 3L | 16790999..16791330 | 486..155 | 1660 | 100 | Minus |
| 3L | 28110227 | 3L | 16788409..16788545 | 2765..2629 | 685 | 100 | Minus |
| 3L | 28110227 | 3L | 16791391..16791525 | 154..20 | 675 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:48:43 has no hits.
BS20783.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:41:28 Download gff for
BS20783.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9674-RC | 165..2910 | 17..2762 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:55:02 Download gff for
BS20783.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9674-RF | 3881..6626 | 17..2762 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:54:59 Download gff for
BS20783.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9674-RF | 3881..6626 | 17..2762 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:54:59 Download gff for
BS20783.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16788412..16788543 | 2631..2762 | 100 | <- | Minus |
| 3L | 16788662..16789320 | 1972..2630 | 100 | <- | Minus |
| 3L | 16789459..16790943 | 487..1971 | 100 | <- | Minus |
| 3L | 16790999..16791330 | 155..486 | 100 | <- | Minus |
| 3L | 16791391..16791526 | 17..154 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:55:02 Download gff for
BS20783.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16781512..16781643 | 2631..2762 | 100 | <- | Minus |
| arm_3L | 16781762..16782420 | 1972..2630 | 100 | <- | Minus |
| arm_3L | 16782559..16784043 | 487..1971 | 100 | <- | Minus |
| arm_3L | 16784099..16784430 | 155..486 | 100 | <- | Minus |
| arm_3L | 16784491..16784626 | 17..154 | 98 | | Minus |
BS20783.pep Sequence
Translation from 16 to 2763
> BS20783.pep
MGCTMMRKCHLNTCPVGIATQDPELRKKFTGKPEHVINFFFMLAEDIRKI
MAGLGIRKFQDLIGRTDLLRVASQRDAKASNLDLKLLLQPALELRPGTNI
VGGSVKQDFQLEKRSDNELIAKAQQIFSGADDNVTVKMRIHNEERAFGST
LSYHIACKYGEAGLPAGKSIDIFLEGSAGQSFCAFLARGVNVTLKGDAND
YVGKGLCGGNVVIMPQDTVPFESHLNVIVGNVCLYGATEGTAYFRGIASE
RFCVRNSGVTAVVEGVGDHGCEYMTGGVVVILGLTGRNFAAGMSGGIAYV
YDLDGSFKPKVNPESVELLPLEIEKDVLLVKELLADFIEKTGSKVAKELL
DNWAEAQGKFVKVFPYEYQKALKDMAEQQAVEQPLKSAIENGNGKHEPHI
KDIEEAIQDVVLEQKRADRVLDKTRGFVKYKRESAPYRDAGERQKDWDEV
YNFPHVRKNLKVQAARCMECGVPFCQSNSTGCPLGNIIPKWNDLVFHGEW
QEALRQLLQTNNFPEFTGRVCPAPCEGSCVLGISEPAVTIKNIECAIIDH
AFEQGWIKPEIPEVRTGKRVAIVGSGPSGLAASQQLNRAGHFVTVFERND
RVGGLLQYGIPTMKLSKEVVKRRVDLMADEGIEFRTNVHVGKDLKAEQLL
QEYDAVLLTTGSTWPRDLPLANRDLKGIHFAMEFLEAQQKKQLGGKNDII
SAAGKNVIIIGGGDTGCDCIATSLRQGAKSITTFEILPEPPQKRAQDNPW
PQWPKVFRVDYGHEEVKLKWGKDPRQYCTTTKEFVGENGAIKGVNTVEVE
WTKTETGQWRMQEVAGSEKYFPADLILLAMGFLGPEKTVPSELGLELDPR
GNIKASNGQYGTSNSKVFAAGDCRRGQSLVVWAITEGRQAARQVDSYLTG
RPSGLPGPGGVIATS*
BS20783.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:17:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9674-PG | 2115 | CG9674-PG | 1201..2115 | 1..915 | 4809 | 100 | Plus |
| CG9674-PF | 2115 | CG9674-PF | 1201..2115 | 1..915 | 4809 | 100 | Plus |
| CG9674-PD | 2114 | CG9674-PD | 1200..2114 | 1..915 | 4809 | 100 | Plus |
| CG9674-PA | 2114 | CG9674-PA | 1200..2114 | 1..915 | 4809 | 100 | Plus |
