BS20784.complete Sequence
827 bp assembled on 2011-01-18
GenBank Submission: KX804493
> BS20784.complete
GAAGTTATCAGTCGACATGATAAACAACTCGTTTGAGTTCTCGTCCGACG
ACGATTCAGACGTGAGTCCACACGACATGGAGGGCAATAGTTCGGATCTG
GAGTACGGAGCTCGGGATATGAACGGTCTCAGCCTGAATTCGTACAGCAG
CGGATTGCAGGCTCAGCTTCAGCGCGATCTGGACCGGCAGCACCTGCTCA
GTGATCGACCACGCACCGGAGTTTACGAGAATGTCATTTCCGAGGGAGTC
GAGGGCATTGAGCATCAGGAAAGATACGAGCGCCTACTGCGTCGTGCCCA
AGTCGAGGATTTGACGGAGGTGTCCGGCATCGGCTGCCTTTACCAGAGCG
GCGTGGACCGCCTGGGTCGGCCTGTGATTGTGTTCTGCGGCAAATGGTTC
CCCGCCCAGAACATTGACCTGGAAAAGGCCTTGCTATATCTGATTAAGCT
ACTGGATCCCATCGTTAAAGGAGACTATGTCATCTCGTACTTCCACACGC
TGACATCCACGAACAACTATCCATCGCTGCACTGGCTGCGTGAGGTCTAC
AGTGTGTTGCCTTACAAATACAAGAAGAACCTGAAGGCCTTCTATATCGT
GCACCCCACTTTCTGGACTAAGATGATGACCTGGTGGTTCACCACGTTCA
TGGCGCCTGCCATCAAGGCCAAGGTGCACTCGCTTCCGGGTGTGGAGCAC
CTGTACTCGGCCATCACCAAGGATCAGCTGGAAATTCCCGCCTACATCAC
CGAGTACGACATGGCGACCAATGGCCTGCATTACTTCAATCCTGTGCCGA
CTGCCTCGTAGAAGCTTTCTAGACCAT
BS20784.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:12:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18812-RD | 795 | CG18812-PD | 1..795 | 17..811 | 3975 | 100 | Plus |
| CG18812-RC | 1623 | CG18812-PC | 857..1623 | 45..811 | 3835 | 100 | Plus |
| CG18812-RB | 735 | CG18812-PB | 1..735 | 77..811 | 3675 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:12:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18812-RD | 1719 | CG18812-RD | 109..904 | 17..812 | 3980 | 100 | Plus |
| CG18812-RB | 3362 | CG18812-RB | 140..908 | 44..812 | 3845 | 100 | Plus |
| CG18812-RC | 2689 | CG18812-RC | 1107..1874 | 45..812 | 3840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:12:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7719376..7719574 | 766..568 | 995 | 100 | Minus |
| 2R | 25286936 | 2R | 7719842..7719998 | 428..272 | 785 | 100 | Minus |
| 2R | 25286936 | 2R | 7719641..7719782 | 567..426 | 710 | 100 | Minus |
| 2R | 25286936 | 2R | 7725868..7725995 | 172..45 | 640 | 100 | Minus |
| 2R | 25286936 | 2R | 7725689..7725792 | 273..170 | 520 | 100 | Minus |
| 2R | 25286936 | 2R | 7719261..7719307 | 812..766 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:12:15 has no hits.
BS20784.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:39:09 Download gff for
BS20784.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18812-RB | 137..904 | 44..811 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:50:19 Download gff for
BS20784.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18812-RD | 109..903 | 17..811 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:58:32 Download gff for
BS20784.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18812-RD | 109..903 | 17..811 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:58:32 Download gff for
BS20784.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7725868..7725995 | 45..172 | 100 | <- | Minus |
| 2R | 7726295..7726322 | 17..44 | 100 | | Minus |
| 2R | 7719843..7719996 | 274..427 | 100 | <- | Minus |
| 2R | 7725689..7725789 | 173..273 | 100 | <- | Minus |
| 2R | 7719376..7719574 | 568..766 | 100 | <- | Minus |
| 2R | 7719641..7719780 | 428..567 | 100 | <- | Minus |
| 2R | 7719262..7719306 | 767..811 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:50:19 Download gff for
BS20784.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3606767..3606811 | 767..811 | 100 | <- | Minus |
| arm_2R | 3606881..3607079 | 568..766 | 100 | <- | Minus |
| arm_2R | 3607146..3607285 | 428..567 | 100 | <- | Minus |
| arm_2R | 3607348..3607501 | 274..427 | 100 | <- | Minus |
| arm_2R | 3613194..3613294 | 173..273 | 100 | <- | Minus |
| arm_2R | 3613373..3613500 | 45..172 | 100 | <- | Minus |
| arm_2R | 3613800..3613827 | 17..44 | 100 | | Minus |
BS20784.pep Sequence
Translation from 16 to 810
> BS20784.pep
MINNSFEFSSDDDSDVSPHDMEGNSSDLEYGARDMNGLSLNSYSSGLQAQ
LQRDLDRQHLLSDRPRTGVYENVISEGVEGIEHQERYERLLRRAQVEDLT
EVSGIGCLYQSGVDRLGRPVIVFCGKWFPAQNIDLEKALLYLIKLLDPIV
KGDYVISYFHTLTSTNNYPSLHWLREVYSVLPYKYKKNLKAFYIVHPTFW
TKMMTWWFTTFMAPAIKAKVHSLPGVEHLYSAITKDQLEIPAYITEYDMA
TNGLHYFNPVPTAS*
BS20784.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:02:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18812-PD | 264 | CG18812-PD | 1..264 | 1..264 | 1405 | 100 | Plus |
| CG18812-PC | 540 | CG18812-PC | 286..540 | 10..264 | 1356 | 99.6 | Plus |
| CG18812-PF | 534 | CG18812-PF | 286..534 | 10..264 | 1308 | 97.3 | Plus |
| CG18812-PB | 244 | CG18812-PB | 1..244 | 21..264 | 1298 | 100 | Plus |
| CG18812-PA | 217 | CG18812-PA | 37..217 | 84..264 | 973 | 99.4 | Plus |
