BS20788.complete Sequence
971 bp assembled on 2011-01-18
GenBank Submission: KX803982
> BS20788.complete
GAAGTTATCAGTCGACATGGGGAATATATCAGCATCCATAACATCACAAA
GCAAAATGGGCAAGGATTTCGATGCTGTTGGATTCGTCAAGGATTTCGCT
GCCGGAGGCATCTCCGCAGCTGTCTCCAAGACTGCCGTCGCCCCCATTGA
GCGTGTGAAACTGCTCCTGCAGGTTCAGCACATCTCGAAACAAATCAGCC
CCGACAAGCAGTACAAGGGCATGGTTGATTGCTTTATCCGCATTCCAAAG
GAGCAGGGATTCTCGTCCTTCTGGCGCGGCAACTTGGCCAACGTCATCAG
ATACTTCCCAACCCAGGCTCTGAACTTTGCCTTCAAGGACAAGTACAAGC
AGGTCTTCCTGGGTGGCGTGGACAAGAACACCCAGTTCTGGCGCTACTTC
GCCGGCAACTTGGCCTCCGGTGGTGCCGCTGGTGCTACCTCTCTGTGCTT
TGTCTACCCCTTGGACTTTGCCCGTACTCGCTTGGCTGCTGATACTGGCA
AGGGTGGTCAGCGTGAATTCACCGGTCTGGGCAACTGCTTGACCAAGATC
TTCAAGAGCGACGGCATCGTTGGATTGTACCGTGGTTTCGGAGTGTCCGT
GCAGGGCATCATCATCTACCGTGCCGCCTACTTCGGCTTCTACGATACCG
CTCGCGGTATGCTGCCCGACCCCAAGAACACACCCATCTACATCAGCTGG
GCCATCGCCCAGGTTGTGACAACCGTCGCTGGCATCGTGTCCTATCCCTT
CGATACCGTGCGTCGTCGCATGATGATGCAGTCTGGTCGCAAGGCCACCG
AGGTCATCTACAAGAACACACTGCACTGCTGGGCCACCATCGCCAAGCAG
GAGGGCACCGGTGCCTTCTTCAAGGGCGCCTTCTCCAACATTCTCAGAGG
AACTGGTGGCGCTTTCGTGCTTGTGTTGTACGATGAGATCAAGAAGGTCT
TGTAAAAGCTTTCTAGACCAT
BS20788.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:07:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sesB-RD | 939 | CG16944-PD | 1..939 | 17..955 | 4695 | 100 | Plus |
| sesB-RC | 939 | CG16944-PC | 1..939 | 17..955 | 4695 | 100 | Plus |
| sesB-RE | 900 | CG16944-PE | 1..900 | 56..955 | 4500 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:07:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sesB-RD | 1853 | CG16944-RD | 186..1126 | 16..956 | 4705 | 100 | Plus |
| sesB-RC | 1747 | CG16944-RC | 180..1120 | 16..956 | 4705 | 100 | Plus |
| sesB-RE | 1685 | CG16944-RE | 151..1058 | 49..956 | 4540 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:07:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10781620..10782096 | 956..480 | 2385 | 100 | Minus |
| X | 23542271 | X | 10782378..10782682 | 354..50 | 1525 | 100 | Minus |
| X | 23542271 | X | 10782173..10782302 | 480..351 | 650 | 100 | Minus |
| X | 23542271 | X | 10779285..10779600 | 891..576 | 500 | 77.2 | Minus |
| X | 23542271 | X | 10780210..10780337 | 339..212 | 445 | 89.8 | Minus |
| X | 23542271 | X | 10780001..10780123 | 472..350 | 300 | 82.9 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:07:09 has no hits.
BS20788.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:38:33 Download gff for
BS20788.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sesB-RD | 183..1119 | 17..953 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:48:13 Download gff for
BS20788.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sesB-RC | 181..1117 | 17..953 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:56:41 Download gff for
BS20788.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sesB-RC | 181..1117 | 17..953 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:56:41 Download gff for
BS20788.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10781623..10782095 | 481..953 | 100 | <- | Minus |
| X | 10782173..10782300 | 353..480 | 100 | <- | Minus |
| X | 10782380..10782680 | 52..352 | 100 | <- | Minus |
| X | 10782777..10782811 | 17..51 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:48:13 Download gff for
BS20788.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10675656..10676128 | 481..953 | 100 | <- | Minus |
| arm_X | 10676206..10676333 | 353..480 | 100 | <- | Minus |
| arm_X | 10676413..10676713 | 52..352 | 100 | <- | Minus |
| arm_X | 10676810..10676844 | 17..51 | 100 | | Minus |
BS20788.pep Sequence
Translation from 16 to 954
> BS20788.pep
MGNISASITSQSKMGKDFDAVGFVKDFAAGGISAAVSKTAVAPIERVKLL
LQVQHISKQISPDKQYKGMVDCFIRIPKEQGFSSFWRGNLANVIRYFPTQ
ALNFAFKDKYKQVFLGGVDKNTQFWRYFAGNLASGGAAGATSLCFVYPLD
FARTRLAADTGKGGQREFTGLGNCLTKIFKSDGIVGLYRGFGVSVQGIII
YRAAYFGFYDTARGMLPDPKNTPIYISWAIAQVVTTVAGIVSYPFDTVRR
RMMMQSGRKATEVIYKNTLHCWATIAKQEGTGAFFKGAFSNILRGTGGAF
VLVLYDEIKKVL*
BS20788.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:00:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sesB-PD | 312 | CG16944-PD | 1..312 | 1..312 | 1619 | 100 | Plus |
| sesB-PC | 312 | CG16944-PC | 1..312 | 1..312 | 1619 | 100 | Plus |
| sesB-PE | 299 | CG16944-PE | 1..299 | 14..312 | 1559 | 100 | Plus |
| sesB-PB | 299 | CG16944-PB | 1..299 | 14..312 | 1559 | 100 | Plus |
| sesB-PA | 299 | CG16944-PA | 1..299 | 14..312 | 1559 | 100 | Plus |
