BS20789.complete Sequence
2426 bp assembled on 2011-02-17
GenBank Submission: KX804869
> BS20789.complete
GAAGTTATCAGTCGACATGGAGGCAGAACAACAAGAATTCGCTGTGAAAC
AATTCATTGATCTCTGCAACAATCTAGGTGCTAACTGCAGCACGACGACA
GCCACATCCCCGTCAACTTCCTCCTCCTCAGCCAGCAGCACGCAGAACTT
AATAGCAGTAGTGCCGCCACAGTTGCAGCAGCTGCAGGTGCAATTACCGG
CGCCAGGTGGAGGAGGAGGAGCAGGTGCAGGAGGAGGAGGTGGTGGAGGT
GGGGGAGCTGCGCCTGTGAGGCGCCACATCTCGCATACGACAGCCGTGAA
GTTTTTGTACGCCCGTAAATTTGATATACCACGAGCAGTCTCACTGTACG
AACAGCATGAACAGATCCGCCTGAAGGAGTATCTATATAACATCGATCCG
GATGTGGAGCCCTTGCGCTCCGAGTTGCAGACCGGCAAGTTCACAATCCT
GCCCGCACGCACTTCCAGTGGCGCTGCCATCGCCCTTTTCACCGCCAATC
GACACAGTCCGCTGAGCGTTTCGCACACAACCACGCTGCAGGGCATCGTC
TATCAGCTGGACAGTGCGCTCCAGGATTCGGAGACGCAGCGTGCCGGGCT
CGTTTTTATCTACGACATGAGCGGCTCCAAGTATTCCAACTTCGACTACG
ACCTCTCCCAGAAGATTCTCACACTGCTTAAGGGCGGCTATCCAGCGCGT
CTGAAGAAGGTCCTGATCGTGACGGCGCCACTGTGGTTCAAGGCACCCTT
CAAGATCCTGCGTCTGTTCGTGCGCGAGAAGCTGCGCGAGCGAGTGTTCA
CTGTATCGGTGCCTCAATTGGCGCTGCACGTGCCGCGCAAGGCGCTGCCC
ATTCACTTGGGTGGCACGCTGGAGGTCGATCACGCCACATGGTTGCTCAG
CTGCCGCCAATCGATGACGAATCGTGAGGACGAGCTGCTGGCCAATATCG
TGGGTGTGGGCGGTGGATCCGGATCCGGTTCAGCAGCTGGATCAGCAGCA
ATTGTGTCCACCAATGGCACGGAAACCGAGGCCGCGACAACGGCAGCCAC
GATAATCAGCGCCGTCCACCAGTTGGGCGATAATAATACCACCGTGGTGA
CGGTCAGCAATGGCGTCGGTCCAGCTGGATCGGCATCTGGCGGAGCAACG
ACAGCAGCGTCGGCGGCGACGGAACCCAACGAAAATATCACAATCAACGG
ACTGAGTCCAAGCCACCGTCAGGCGGCGAATAACAGCAGTAGCAGTAGCA
GCAGTGCAGCCACAGTGGCCAATCCCCTCAAGCTCAACACAAGTGGCTCC
GCGGACAACAATAGTACCATCACGAACGCCACCACAGCTGCTGGAGCAGC
CGGAGCAGCTGCTGGCACCACCACCAATGGCGGCGGCGAGTTCTGGTCAG
AGAATCCACCCAGCAGCGCCTCATCCGGCTTCAGTGACGATGATAGTCTC
GCCGGTCAAGAGGGCGATCCCAAGCCCATTGATCAGATTGTTCAGATGGT
TAAGCAGCGCGGACGCCATGGTCTGATTAAGGAGTACGCGGACATTCGGA
ATAGGGCGCCCGAGGGCACCTTTCTGCATGCGAGAATGCGGGCCAATCTG
ACCAAGAATCGCTACACAGACGTCCTCTGCTACGATCACAGTCGAGTTGT
TCTGGCACACGAAGACGGCGACGAGCCGTCGGATTATATTAATGCGAATT
TCGTCGATGGCTACAAACAAAAGAATGCCTATATTTCAACTCAAGGTCCA
TTACCAAAGACATCCCAGGACTTTTGGCGCATGATCTGGGAACAACATTG
TTTAGTTATAGTGATGACGACGCGCGTGATGGAGCGCGGACGCGTGAAAT
GCGGCCAGTACTGGGAGCCGACTGAAGAAAGTTCCTTAGAGTTTGGCGAC
TACCATGTGCGAACAATTAGCGTTGAGTGCAACGAGGACTATATGGTTGC
CTCGTTAGAATTGAGAAACATAAAGACTGACGAAATTCGCAATGTCTCAC
ATTGGCAGTTCACCAGCTGGCCGGACTATGGCGTTCCCAGCTCGGCCATG
GCCATGCTGAACTTCCTGCAGAAGGTGCGTGAGAAGCAGGCGCAGCTTGT
CCAAGGACTGGGCGACACCTGGGCGGGTCATCCCCGTGGACCGCCCATTG
TGGTGCACTGCAGTGCAGGCATTGGACGCACAGGTACATTCATCACCCTG
GACATTTGCATATCGCGCCTGGAGGACGTGGGCACGGCGGACATACGTGG
AACGGTTGAGAAGATCCGGTCGCAGCGAGCCTACTCCATTCAGATGCCCG
ATCAGTACGTGTTCTGTCACCTGGCCCTCATCGAATACGCATATTCGCGT
GGAATGCTACAGACGGTCGATCTGGCTGGCTTCGATGAGCGCGAACCGGA
CTCGGAGTAGAAGCTTTCTAGACCAT
BS20789.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:16:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(1)G0232-RC | 2394 | CG32697-PC | 1..2394 | 17..2410 | 11970 | 100 | Plus |
| l(1)G0232-RG | 2373 | CG32697-PG | 4..2373 | 41..2410 | 11850 | 100 | Plus |
| l(1)G0232-RA | 2484 | CG32697-PA | 115..2484 | 41..2410 | 11850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:16:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(1)G0232-RC | 3053 | CG32697-RC | 276..2669 | 17..2410 | 11970 | 100 | Plus |
| l(1)G0232-RG | 5668 | CG32697-RG | 488..2857 | 41..2410 | 11850 | 100 | Plus |
| l(1)G0232-RF | 5646 | CG32697-RF | 466..2835 | 41..2410 | 11850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:16:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9630194..9631097 | 1584..681 | 4520 | 100 | Minus |
| X | 23542271 | X | 9643957..9644367 | 451..41 | 2055 | 100 | Minus |
| X | 23542271 | X | 9643656..9643888 | 683..451 | 1165 | 100 | Minus |
| X | 23542271 | X | 9629668..9629899 | 1975..1744 | 1160 | 100 | Minus |
| X | 23542271 | X | 9629106..9629336 | 2410..2180 | 1155 | 100 | Minus |
| X | 23542271 | X | 9629394..9629605 | 2185..1974 | 1060 | 100 | Minus |
| X | 23542271 | X | 9629961..9630125 | 1747..1583 | 825 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:16:27 has no hits.
BS20789.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:41:41 Download gff for
BS20789.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0232-RC | 45..2438 | 17..2410 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:10:39 Download gff for
BS20789.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0232-RC | 276..2669 | 17..2410 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:07:10 Download gff for
BS20789.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0232-RC | 276..2669 | 17..2410 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:07:10 Download gff for
BS20789.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9629106..9629332 | 2184..2410 | 100 | <- | Minus |
| X | 9629396..9629603 | 1976..2183 | 100 | <- | Minus |
| X | 9629668..9629897 | 1746..1975 | 100 | <- | Minus |
| X | 9629963..9630123 | 1585..1745 | 100 | <- | Minus |
| X | 9630194..9631095 | 683..1584 | 100 | <- | Minus |
| X | 9643657..9643887 | 452..682 | 100 | <- | Minus |
| X | 9643957..9644367 | 41..451 | 100 | <- | Minus |
| X | 9658847..9658870 | 17..40 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:10:39 Download gff for
BS20789.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9523139..9523365 | 2184..2410 | 100 | <- | Minus |
| arm_X | 9523429..9523636 | 1976..2183 | 100 | <- | Minus |
| arm_X | 9523701..9523930 | 1746..1975 | 100 | <- | Minus |
| arm_X | 9523996..9524156 | 1585..1745 | 100 | <- | Minus |
| arm_X | 9524227..9525128 | 683..1584 | 100 | <- | Minus |
| arm_X | 9537690..9537920 | 452..682 | 100 | <- | Minus |
| arm_X | 9537990..9538400 | 41..451 | 100 | <- | Minus |
| arm_X | 9552880..9552903 | 17..40 | 100 | | Minus |
BS20789.pep Sequence
Translation from 16 to 2409
> BS20789.pep
MEAEQQEFAVKQFIDLCNNLGANCSTTTATSPSTSSSSASSTQNLIAVVP
PQLQQLQVQLPAPGGGGGAGAGGGGGGGGGAAPVRRHISHTTAVKFLYAR
KFDIPRAVSLYEQHEQIRLKEYLYNIDPDVEPLRSELQTGKFTILPARTS
SGAAIALFTANRHSPLSVSHTTTLQGIVYQLDSALQDSETQRAGLVFIYD
MSGSKYSNFDYDLSQKILTLLKGGYPARLKKVLIVTAPLWFKAPFKILRL
FVREKLRERVFTVSVPQLALHVPRKALPIHLGGTLEVDHATWLLSCRQSM
TNREDELLANIVGVGGGSGSGSAAGSAAIVSTNGTETEAATTAATIISAV
HQLGDNNTTVVTVSNGVGPAGSASGGATTAASAATEPNENITINGLSPSH
RQAANNSSSSSSSAATVANPLKLNTSGSADNNSTITNATTAAGAAGAAAG
TTTNGGGEFWSENPPSSASSGFSDDDSLAGQEGDPKPIDQIVQMVKQRGR
HGLIKEYADIRNRAPEGTFLHARMRANLTKNRYTDVLCYDHSRVVLAHED
GDEPSDYINANFVDGYKQKNAYISTQGPLPKTSQDFWRMIWEQHCLVIVM
TTRVMERGRVKCGQYWEPTEESSLEFGDYHVRTISVECNEDYMVASLELR
NIKTDEIRNVSHWQFTSWPDYGVPSSAMAMLNFLQKVREKQAQLVQGLGD
TWAGHPRGPPIVVHCSAGIGRTGTFITLDICISRLEDVGTADIRGTVEKI
RSQRAYSIQMPDQYVFCHLALIEYAYSRGMLQTVDLAGFDEREPDSE*
BS20789.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:19:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(1)G0232-PC | 797 | CG32697-PC | 1..797 | 1..797 | 4120 | 100 | Plus |
| l(1)G0232-PB | 802 | CG32697-PB | 11..802 | 6..797 | 4083 | 99.7 | Plus |
| l(1)G0232-PG | 790 | CG32697-PG | 2..790 | 9..797 | 4080 | 100 | Plus |
| l(1)G0232-PA | 827 | CG32697-PA | 39..827 | 9..797 | 4080 | 100 | Plus |
| l(1)G0232-PF | 597 | CG32697-PF | 1..597 | 201..797 | 3103 | 100 | Plus |
