Clone BS20792 Report

Search the DGRC for BS20792

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:207
Well:92
Vector:pDNR-Dual
Associated Gene/TranscriptDNApol-epsilon58-RA
Protein status:BS20792.pep: gold
Sequenced Size:1610

Clone Sequence Records

BS20792.complete Sequence

1610 bp assembled on 2011-02-17

GenBank Submission: KX803255

> BS20792.complete
GAAGTTATCAGTCGACATGGATGTGGATTTACTGCCGCTGAGAAAGCGAA
TAACGAACACTTTCAAGTTATGTGGATTCCTGATCCGCTCGGAGAACAGT
TCCTACCTGGCGGAGCAGCTGCTGCCCTTCGACGCAGCGGAACGGGACAA
ATGGCTGACGGTGATCACCGAGAATCTCCAAAGCCAAAAGCTTTTGACGC
CTCATGTGGAGCGAGCCGCCCTGGAGAAGGCTATCAATGAACTTAACCGG
GTGGGATTGGATGAAGGGGAGACGGTCTTTGCCCTGATCGATGCCTTTAC
GGTGCCCCGTTTTCGGTACAACCAGCGGATAAAGAAATTCGAACTGGACA
CACAGCCGCGCCAGTTGCTGACCGCTCCGCGCATGAAATCGGACTACATG
CAGCAACGATATGCCATGTTACTACAGAAAACTCTGCGACACGACCTCTT
TGCCCCAGCCGTCATCCAGGATGGCGTTGGAGCCGAGGCCCAGGCCAAGA
AATTTAAGCTCCAGTTCGCTGAGAACCTGCTGGCCACGTCGGCGATGAAG
GAGGCAGTTGTTTTGGGACTACTTACCCAGCTTAAGGAGGGCAAGTTCTA
TGTCGAGGATCCCACGGGTTGCGTCCAGTTAGATCTCACTGGAGCCCGTT
TCCATGCCGGCTTCTTCTGCGAGGGCTGCTTTGTTTTAGCCGAGGGCAAC
TATAACAACGGTGTGCTCAAGGTTGATGGCCTGGGCTTTCCACCCGCGGA
ACCGGCAAACAGCAGTCGAGCATTTTTCGGCACCGCCAACACTTGGGGCG
GTGAATCTGCTAAGCTGCTGAAGTACTCAGCCGGACTACAGGAACTGGAG
CGTACCAACACGGAAACAACCATTGTTTTCCTTTCCGACGTACGGTTGGA
TCTGCCGGTTGTCATGGAGAAGCTGCGCCAGTTGTTCGTGGGCTATGATT
CCTGCCCGCCGCAAGCTATAGTGCTCATGGGCCCCTTCACGGCCAGCACA
AGGAATCATCATGAGCTGAGGCATCACCTAGATGCATTGGGTGGCTTGGC
AGCTGGCTGCGAGCAGCTGAAGAAGCAAACGGATCTGATACTTGTTCCCT
CGTCTGAAGATCCCACGGCACCTAATATTCTGCCTCGTGCTCCAATTCCC
GAATGCCTGGCAGCCGGGCTGCTAAAGGCCTGGCCACGCACCCAGTTGGC
TACGAATCCGTGTCGCCTACAGTACTGCACCCAGCAGATTGTGGTCTGCC
GTCTGGATTTAATGGCCAAGTTTTGTCGCAACACCTTGCATTTTCCCGAA
GATACGTCCCAGATCGAGCAGCATTTTGCCAGAACGATTGTGTGCCAGGG
TCATTTGGTGCCCATTCATCCGATTGCCATGCCAGTGCACTGGGACTACG
ATCCTGCTTTGTGGTTGTATCCACTGCCGGATCTTATTGTCATGGGCGAT
TCGTGCCAGAGCTTTAGCAGCAGTCAACATGGCTGCACTGTTCTCAATAC
CGGCTCCTTTGTCAAGTCCAAGTTCGCATTCAAAGTGTATATACCAGCGA
CGCGAACGATTGAGGACTCGGAAATACCGGACGAATTGGAGTAGAAGCTT
TCTAGACCAT

BS20792.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:17:14
Subject Length Description Subject Range Query Range Score Percent Strand
DNApol-epsilon58-RA 1578 CG10489-PA 1..1578 17..1594 7410 98 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:17:16
Subject Length Description Subject Range Query Range Score Percent Strand
DNApol-epsilon58-RA 1688 CG10489-RA 57..1634 17..1594 7410 98 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:17:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5895745..5896617 1594..722 4095 97.9 Minus
3L 28110227 3L 5896674..5897379 722..17 3320 98 Minus
Blast to na_te.dros performed on 2014-11-27 07:17:13 has no hits.

BS20792.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:41:42 Download gff for BS20792.complete
Subject Subject Range Query Range Percent Splice Strand
Pole2-RA 1..1578 17..1594 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:11:00 Download gff for BS20792.complete
Subject Subject Range Query Range Percent Splice Strand
Pole2-RA 57..1634 17..1594 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:07:30 Download gff for BS20792.complete
Subject Subject Range Query Range Percent Splice Strand
DNApol-epsilon58-RA 57..1634 17..1594 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:07:30 Download gff for BS20792.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5895745..5896616 723..1594 97 <- Minus
3L 5896674..5897379 17..722 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:11:00 Download gff for BS20792.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5888845..5889716 723..1594 97 <- Minus
arm_3L 5889774..5890479 17..722 98   Minus

BS20792.pep Sequence

Translation from 16 to 1593

> BS20792.pep
MDVDLLPLRKRITNTFKLCGFLIRSENSSYLAEQLLPFDAAERDKWLTVI
TENLQSQKLLTPHVERAALEKAINELNRVGLDEGETVFALIDAFTVPRFR
YNQRIKKFELDTQPRQLLTAPRMKSDYMQQRYAMLLQKTLRHDLFAPAVI
QDGVGAEAQAKKFKLQFAENLLATSAMKEAVVLGLLTQLKEGKFYVEDPT
GCVQLDLTGARFHAGFFCEGCFVLAEGNYNNGVLKVDGLGFPPAEPANSS
RAFFGTANTWGGESAKLLKYSAGLQELERTNTETTIVFLSDVRLDLPVVM
EKLRQLFVGYDSCPPQAIVLMGPFTASTRNHHELRHHLDALGGLAAGCEQ
LKKQTDLILVPSSEDPTAPNILPRAPIPECLAAGLLKAWPRTQLATNPCR
LQYCTQQIVVCRLDLMAKFCRNTLHFPEDTSQIEQHFARTIVCQGHLVPI
HPIAMPVHWDYDPALWLYPLPDLIVMGDSCQSFSSSQHGCTVLNTGSFVK
SKFAFKVYIPATRTIEDSEIPDELE*

BS20792.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:19:05
Subject Length Description Subject Range Query Range Score Percent Strand
DNApol-epsilon58-PA 525 CG10489-PA 1..525 1..525 2751 100 Plus