BS20810.complete Sequence
4352 bp assembled on 2011-02-17
GenBank Submission: KX803561
> BS20810.complete
GAAGTTATCAGTCGACATGCCAACTCTGGGTCTCCTGTTCGCCTCCATCG
GCATTGCCGTGCTGGCGATGGGTGTGCCGCATTGCAGGGGCTACACCATC
AAGGAGGACGAATCCTTCCTGCAGCAACCGCACTATGCTAGCCAAGAGCA
GCTGGAGGACCTGTTTGCTGGCCTGGAGAAGGCGTACCCCAATCAGGCCA
AAGTCCACTTCCTTGGTCGATCTCTAGAAGGACGAAATCTGCTCGCCCTG
CAAATCTCGCGGAACACCCGGTCGCGGAATCTCCTTACACCTCCAGTAAA
GTACATAGCCAATATGCATGGAGACGAAACGGTGGGCAGGCAGCTCCTTG
TTTATATGGCACAATATCTGCTCGGTAATCACGAAAGAATCAGCGACCTG
GGCCAGCTGGTCAACAGCACCGATATCTACTTGGTGCCCACGATGAATCC
AGATGGCTATGCGTTGTCCCAGGAAGGCAACTGCGAGTCGCTGCCCAACT
ATGTGGGTCGTGGCAATGCGGCCAACATCGATTTGAATCGCGATTTCCCC
GATCGCCTGGAGCAGAGCCATGTCCACCAGTTGCGCGCCCAGTCTCGTCA
GCCGGAAACAGCAGCCCTGGTAAATTGGATCGTTAGCAAACCGTTTGTGC
TCTCCGCCAATTTCCATGGCGGAGCTGTTGTGGCCAGCTATCCCTATGAC
AACTCCTTGGCTCACAATGAGTGCTGCGAGGAGAGTTTGACTCCGGATGA
TCGGGTCTTCAAGCAGCTGGCCCACACCTATTCTGACAACCATCCGATTA
TGAGAAAGGGCAACAATTGCAACGATAGCTTCTCGGGAGGTATCACCAAC
GGAGCCCACTGGTATGAGTTGTCCGGTGGAATGCAGGACTTTAACTATGC
GTTTAGCAACTGTTTCGAGCTGACCATCGAGTTGTCGTGCTGCAAGTATC
CGGCAGCAAGCACTTTGCCCCAGGAATGGCAGCGGAACAAGGCATCCCTG
CTGCAGCTGCTGCGCCAGGCACATATCGGCATCAAGGGCCTGGTGACCGA
TGCCAGTGGCTTTCCAATAGCCGATGCCAATGTCTACGTGGCTGGACTAG
AGGAGAAACCCATGCGCACTTCCAAACGTGGCGAATACTGGAGGCTTTTG
ACCCCGGGACTCTATAGCGTGCACGCCTCCGCTTTTGGTTACCAGACCAG
TGCCCCGCAACAGGTCCGGGTGACCAACGATAACCAGGAGGCCTTGCGCC
TGGACTTTAAGCTTGCGCCCGTCGAGACGAACTTTGATGGCAACTTCCGG
AAAGTAAAGGTCGAGCGCTCTGAGCCTCCACAGAAGCTCAAGAAGCAGTT
CAATGGGTTCTTGACCCCGACTAAATACGAACACCACAACTTTACGGCAA
TGGAGAGCTATCTGAGGGCGATTAGCAGCAGCTATCCTTCCCTTACACGC
CTCTACAGCATCGGTAAAAGCGTCCAGGGTCGTGATCTTTGGGTGCTTGA
GATTTTTGCCACGCCGGGTTCTCATGTCCCGGGGGTTCCGGAGTTCAAAT
ATGTGGCAAACATGCATGGCAACGAGGTGGTGGGCAAGGAATTGCTTCTA
ATCCTCACCAAATATATGCTGGAACGCTATGGCAATGATGACAGGATTAC
CAAGCTGGTGAATGGCACCCGTATGCATTTTTTGTACAGCATGAACCCCG
ATGGGTATGAGATCTCCATCGAGGGCGACAGAACCGGCGGAGTTGGAAGA
GCGAATGCCCATGGAATTGATTTGAACAGAAACTTCCCCGATCAATATGG
CACGGACCGGTTCAATAAGGTGACAGAGCCAGAGGTGGCTGCCGTCATGA
ACTGGACACTGTCGCTGCCGTTTGTTTTGTCCGCCAATCTCCATGGGGGC
TCCTTGGTGGCCAACTACCCCTTCGACGATAACGAAAATGATTTTAATGA
TCCGTTTATGAGACTCCGCAATTCTAGTATCAATGGCCGCAAGCCAAATC
CCACCGAGGATAATGCTCTTTTCAAACACCTCGCCGGGATTTATTCAAAC
GCACACCCCACTATGTACCTGGGCCAGCCATGTGAGCTCTTCCAGAATGA
ATTCTTCCCTGATGGCATTACGAATGGTGCTCAATGGTATAGTGTTACTG
GGGGAATGCAGGACTGGAACTATGTGCGGGCTGGATGCCTGGAGCTAACC
ATCGAAATGGGTTGCGATAAGTTTCCCAAGGCCGCCGAGCTTTCGCGATA
CTGGGAGGATCATCGCGAGCCTCTGCTACAGTTTATCGAGCAAGTGCATT
GCGGCATTCATGGATTTGTGCATAGCACCATTGGTACGCCGATTGCGGGA
GCTGTTGTTCGTTTGGATGGAGCCAATCATTCGACCTACAGTCAAGTCTT
CGGTGACTATTGGAAGCTAGCGCTGCCTGGTCGACACAATCTCACTGTGT
TGGGGGACAACTATGCGCCACTACGAATGGAAGTTGAAGTACCCGACGTC
CACCCCTTCGAAATGCGAATGGATATCACCCTCATGCCAGACGATCCCCA
GCATTGGGCATCCGCCAATGACTTTAGGATTATTGAAAACGTAGTCAACA
CAAGGTATCACACTAACCCTCAAGTTCGCGCACGCCTGGCGGAGCTGGAG
AACCAAAATGGACAGATTGCCAGCTTTGGATATGCCGATTCTGAATTTGG
CACAATCTTCAATTACCTCAAAATGACATCTGATATTGGCGAGCCCGAGG
AACACAAGTACAAGCTGTTGGTGGTCAGTTCCCTATACGATACAACGGCT
CCTCTGGGAAGGGAAATTTTGCTCAACCTGATACGACACTTGGTCGAAGG
ATTTAAGCTGCAGGACACGTCTGTAGTCGAGTTGCTTAAACGAAGTGTTA
TCTACTTCCTGCCGCAGACTAGCAAGTTCCAAAATGTCTTTGACATGTAC
AACAGCAACACCTCCATTTGCGACCCAGTCCTGGGGGATGAGTTAGCAGA
GCGCATTCTTGGCCCGGAGACAGACCAGGCCAAGGACGTATTCCTGCAAT
TTTTGCGTAGCGAACGCTTTGATTTGATGCTTACCTTTGGAGCAGGCAAC
TCCGACTTGAACTATCCGAAAGGGGACTCGGTGCTAGTGAAGTTTGCCCA
CAGAATGCAGCGAACGGAGTTCAACTACTCGCCCCTGCAGTGCCCTCCAT
CGGCCACGAGACAGCTCCACCGGGAGACCACCGAGAGATTGACCAATATG
ATGTACCGCATATACAATTTGCCCGTTTACACCTTGGGCATTTCCTGCTG
CCGCATGCCGCACCAAAAGAAAATCGCTTCCGTTTGGCGCAAAAACATCG
ATAAGATTAAGAACTTTTTGGCTCTAGTGAAAACCGGAGTAAGTGGCTTG
GTGCAGAACGATAAAGGACAACCATTGAGGGAGGCCTATGTCCGATTGTT
GGAGCACGATAGAATCATTAATGTTACCAAGAATGTGGCGAGATTCCAGT
TGATGCTGCCCCATGGTCTTTATGGCTTGGAGGTAACTGCTCCCAACTAC
GAGTCGCAAATGATTAAGGTGGACGTAGAAGATGGTCGAGTCACGGAATT
GGGCATTATACGCATGCATCCATTCACGTTGATTCGTGGCGTTGTCCTGG
AGCTGCCAAATAACGATAACAGAGCCACCACTAGCATTGCAGGAGTGGTG
CTGGATGAGAGCAACCACCCAGTGCGGAACGCCAAGGTCTCGGTGGTGGG
GCAGACTCAATTGAGAAACTTTACAGGCAGCATGGGACAGTATCGTATAT
CGGCGGTACCCTTAGGCACCATCACTCTAAAAGTAGAGGCACCGCGGCAT
CTGGAGGCCACCCGACAAATGCACCTGATTCAGGGCGGCTTGGCCACAGA
GAACGTGGTCTTTCACCTAAAAGTTAACGAGCATGTCTTTGGATTGCCTC
GCTTTTTGTTCATTTTGTGCGCCAGCGTTCTGATCATTGTTGGTGTCATC
GTCTGTGTGCTATGTGCCCAGTTTTGGTTCTATCGACGCCATCGGGGGGA
TAAGCCTTATTATAACTTCTCACTGCTGCCGCAGAGGGGTAAGGAGCAGT
TTGGCCTTGAGGACGATGATGGGGGTGATGATGGGGAAACGGAGCTCTTT
CGATCTCCCATCAAACGCGGCATGACCATACAGCCGTACTTTGATGAGGA
GCAGCTGGAGCGGATCCTGCACACGGATGACGATGACGACGACGGACCGC
ACATGGAGCCAGAACTTGATGTGGCTGACGATAGCGAAGACGACATAGTG
ATGTTGCATAACAACGGGAACAAGAGACGGCACTAGAAGCTTTCTAGACC
AT
BS20810.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:39:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| svr-RN | 4320 | CG4122-PN | 1..4320 | 17..4336 | 21600 | 100 | Plus |
| svr-RG | 4320 | CG4122-PG | 1..4320 | 17..4336 | 21600 | 100 | Plus |
| svr-RM | 4221 | CG4122-PM | 1..4151 | 17..4167 | 20755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:39:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| svr-RN | 4986 | CG4122-RN | 196..4516 | 17..4337 | 21605 | 100 | Plus |
| svr-RG | 5828 | CG4122-RG | 475..4795 | 17..4337 | 21605 | 100 | Plus |
| svr-RM | 5611 | CG4122-RM | 196..4346 | 17..4167 | 20755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:38:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 504914..506242 | 1406..2734 | 6645 | 100 | Plus |
| X | 23542271 | X | 506592..507807 | 2952..4167 | 6050 | 99.8 | Plus |
| X | 23542271 | X | 502287..502766 | 709..1188 | 2400 | 100 | Plus |
| X | 23542271 | X | 500153..500609 | 17..473 | 2285 | 100 | Plus |
| X | 23542271 | X | 501982..502221 | 470..709 | 1200 | 100 | Plus |
| X | 23542271 | X | 506308..506531 | 2735..2958 | 1120 | 100 | Plus |
| X | 23542271 | X | 507869..508039 | 4167..4337 | 855 | 100 | Plus |
| X | 23542271 | X | 504667..504785 | 1289..1407 | 595 | 100 | Plus |
| X | 23542271 | X | 502835..502937 | 1188..1290 | 515 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:39:00 has no hits.
BS20810.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-09 09:19:09 Download gff for
BS20810.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| svr-RG | 475..4794 | 17..4336 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:52:40 Download gff for
BS20810.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| svr-RG | 475..4794 | 17..4336 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:23:22 Download gff for
BS20810.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| svr-RG | 475..4794 | 17..4336 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:23:22 Download gff for
BS20810.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 506308..506531 | 2735..2958 | 100 | -> | Plus |
| X | 500153..500608 | 17..472 | 100 | -> | Plus |
| X | 501985..502220 | 473..708 | 100 | -> | Plus |
| X | 502287..502766 | 709..1188 | 100 | -> | Plus |
| X | 502836..502936 | 1189..1289 | 100 | -> | Plus |
| X | 504668..504785 | 1290..1407 | 100 | -> | Plus |
| X | 504916..506242 | 1408..2734 | 100 | -> | Plus |
| X | 506599..507806 | 2959..4166 | 100 | -> | Plus |
| X | 507869..508038 | 4167..4336 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:52:40 Download gff for
BS20810.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 394186..394641 | 17..472 | 100 | -> | Plus |
| arm_X | 396018..396253 | 473..708 | 100 | -> | Plus |
| arm_X | 396320..396799 | 709..1188 | 100 | -> | Plus |
| arm_X | 396869..396969 | 1189..1289 | 100 | -> | Plus |
| arm_X | 398701..398818 | 1290..1407 | 100 | -> | Plus |
| arm_X | 398949..400275 | 1408..2734 | 100 | -> | Plus |
| arm_X | 400341..400564 | 2735..2958 | 100 | -> | Plus |
| arm_X | 400632..401839 | 2959..4166 | 100 | -> | Plus |
| arm_X | 401902..402071 | 4167..4336 | 100 | | Plus |
BS20810.pep Sequence
Translation from 16 to 4335
> BS20810.pep
MPTLGLLFASIGIAVLAMGVPHCRGYTIKEDESFLQQPHYASQEQLEDLF
AGLEKAYPNQAKVHFLGRSLEGRNLLALQISRNTRSRNLLTPPVKYIANM
HGDETVGRQLLVYMAQYLLGNHERISDLGQLVNSTDIYLVPTMNPDGYAL
SQEGNCESLPNYVGRGNAANIDLNRDFPDRLEQSHVHQLRAQSRQPETAA
LVNWIVSKPFVLSANFHGGAVVASYPYDNSLAHNECCEESLTPDDRVFKQ
LAHTYSDNHPIMRKGNNCNDSFSGGITNGAHWYELSGGMQDFNYAFSNCF
ELTIELSCCKYPAASTLPQEWQRNKASLLQLLRQAHIGIKGLVTDASGFP
IADANVYVAGLEEKPMRTSKRGEYWRLLTPGLYSVHASAFGYQTSAPQQV
RVTNDNQEALRLDFKLAPVETNFDGNFRKVKVERSEPPQKLKKQFNGFLT
PTKYEHHNFTAMESYLRAISSSYPSLTRLYSIGKSVQGRDLWVLEIFATP
GSHVPGVPEFKYVANMHGNEVVGKELLLILTKYMLERYGNDDRITKLVNG
TRMHFLYSMNPDGYEISIEGDRTGGVGRANAHGIDLNRNFPDQYGTDRFN
KVTEPEVAAVMNWTLSLPFVLSANLHGGSLVANYPFDDNENDFNDPFMRL
RNSSINGRKPNPTEDNALFKHLAGIYSNAHPTMYLGQPCELFQNEFFPDG
ITNGAQWYSVTGGMQDWNYVRAGCLELTIEMGCDKFPKAAELSRYWEDHR
EPLLQFIEQVHCGIHGFVHSTIGTPIAGAVVRLDGANHSTYSQVFGDYWK
LALPGRHNLTVLGDNYAPLRMEVEVPDVHPFEMRMDITLMPDDPQHWASA
NDFRIIENVVNTRYHTNPQVRARLAELENQNGQIASFGYADSEFGTIFNY
LKMTSDIGEPEEHKYKLLVVSSLYDTTAPLGREILLNLIRHLVEGFKLQD
TSVVELLKRSVIYFLPQTSKFQNVFDMYNSNTSICDPVLGDELAERILGP
ETDQAKDVFLQFLRSERFDLMLTFGAGNSDLNYPKGDSVLVKFAHRMQRT
EFNYSPLQCPPSATRQLHRETTERLTNMMYRIYNLPVYTLGISCCRMPHQ
KKIASVWRKNIDKIKNFLALVKTGVSGLVQNDKGQPLREAYVRLLEHDRI
INVTKNVARFQLMLPHGLYGLEVTAPNYESQMIKVDVEDGRVTELGIIRM
HPFTLIRGVVLELPNNDNRATTSIAGVVLDESNHPVRNAKVSVVGQTQLR
NFTGSMGQYRISAVPLGTITLKVEAPRHLEATRQMHLIQGGLATENVVFH
LKVNEHVFGLPRFLFILCASVLIIVGVIVCVLCAQFWFYRRHRGDKPYYN
FSLLPQRGKEQFGLEDDDGGDDGETELFRSPIKRGMTIQPYFDEEQLERI
LHTDDDDDDGPHMEPELDVADDSEDDIVMLHNNGNKRRH*
BS20810.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:24:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| svr-PN | 1439 | CG4122-PN | 1..1439 | 1..1439 | 7634 | 100 | Plus |
| svr-PG | 1439 | CG4122-PG | 1..1439 | 1..1439 | 7634 | 100 | Plus |
| svr-PM | 1406 | CG4122-PM | 1..1396 | 1..1396 | 7333 | 99.2 | Plus |
| svr-PB | 1406 | CG4122-PB | 1..1396 | 1..1396 | 7333 | 99.2 | Plus |
| svr-PH | 1437 | CG4122-PH | 23..1437 | 28..1439 | 7137 | 94.8 | Plus |
