BS20844.complete Sequence
3113 bp assembled on 2011-02-17
GenBank Submission: KX802554
> BS20844.complete
GAAGTTATCAGTCGACATGAAAATGTCTATAACGGGCGCAGATAGTGGGC
GTGCTTCGGCCACCGAGCTCGAGGAGTCCGCCGTCGCGACGATGCAGCTC
AGGGAACCCACCACACCCCCGCCACCCATCAGCGGCGAGGACGTTTTCGC
CAGCCGCGTCTCCCATACCACGTGGTACTTGCCAGTGGAGGACTCGTCCT
CGCCGCCCGCATCAAGCACCAACGAAGCTCGTGGCGCGTCGCCTGACGCT
GAGCCCCGGGAAGGGGATGCAGCTGGCGACTCGTCAATGAGCACCAGTGA
CGAAATGCCAAAACCTGGAAGCAATGAAATGGGAACAACCAGTGACTGCG
CTGCGAGTTTGTCACAGCAAATAAAGGCGGTCTCCAGTCCAACGCTGTCC
GAGCCGTGCTTAGAGGAGCAGCCACAAAAAGGAACTGAAAGTACGGATGT
GGCCAACACAGGCAGCAGCGCCGGAAGTGGAGGCCTAGGCGTATTGCAGA
AATTCAAACGCACCTTGAACAACTTTAACAACAAAAATCAATTGCACATC
TCTCCGCTATCACCAGCGGCAGTAGGTAACAATGCCCCAAAAACTAAGAC
ATCGCCAACAACAACAACCGCATCCATAGCACCTATGATAACGACGACCA
CAGCTAGCGATCCTGGCTCAGAGGCCGGCGATACGAGCTCAGGAAAATAC
CGGTTTGGGCCCCTTATTTGGCGTTCTTCCAAAGAACGCCGTAAGACGAA
GTACAACCGACGCGACAAGTGTAATTCTGGTGATTCAGGCATACAGATCG
AACTAGAACAGGATGAGCAATACTCCCGTGCGACAATGGCCGTGAGCCGC
CAGGATGAGCCCCGCGCTTTTGCGTTAACCAATGGATCGTGTGGTGTCGC
GCTCTCTAAAATGCGAGCCATACGTCGCACCAACTCTGCAAAGGCGAGCA
GCATCCTTGGGCCCTTTATTGTTAAAACCAAAATAGCCAAGCACTTAAAC
ATTGGAGAGTCTGACAAAGCCGAGCGCAAAGCGCCCGAGTCTCTACCCAC
GCGATCGCTTAGCCAACCGAACGGCCTAGAGTCCTACGGTATGGGTCGTC
CCGATCTTGAGGATAGCGACAGCGATAGTGTCGCGTCAAACGAGGAAGCT
ATAAGCTTCTACCCAACCACCTATGCGGAGGTGCTTTACAACTTCACGGC
CGGCGGTCCTCAAGAACTAGGGCTAGAGAGAGGAATGCTTATTGAAATAC
TGCGCAAGGAAGTTGGACCCTGGTGGTTCGGCCGAATTAAGAAGGAGGAA
ACCAATCTGGTGGAAGACATATTGGGTCCTGAGCTGGGCTGGTTCCCCAA
GGAGTTTGTGCGCATTATTCACTGTCCAGAGACGGACAATTTCTTTATAG
CGCACAGGGCTGCCGCTGATGAGGCGGCGGCTGAGGAAGCCACTGCTCGT
GCAGAGGAAGGGTCTGTTCCTGTTCCCGTTGCGGCATTTGCCGAGGACAC
AGACGTTACCGTCACCACAGACCAAAGCAACGTCACCCTTATAGTCATTG
AATCACCACCAACTCCGAGTGCACCCAGTGTGGACTTTGTTGCCCAACCG
GATCACAGCACGATCATACGCCGCAGTGCCGTTCGCGAACTGCTTGATAC
GGAGGTCAATTATGTAAAGCTGCTAGCAGCCATTTGTGATGGTTACCTGC
CAGCTATGAGCAAGCGAATCGATATATTTTCGCCAAACAGTATTCGGCTT
ATCTTCTCCAACATAACGGCCATTTATAAGTTTCAGCGAAAGTTTCTTGA
AGCCTTACGACGAGGCATCGAGCAAAACCAAGTTGCCAAAGTTTTCCTCA
AAATGCACAAAGGTTTCCTTTGCTACTCCACCTATTGTAACGCATACCCT
CGAGCCCTGATAGAACTTGAGACCTACGATCGCGTAAAAGACGCCCGTAC
AATTCTTGAGAACTGTCGCGAATCCCAAAACCTGGCCGAGCTGCCCCTCT
CTGCGCACCTGCTGGCACCTGTGCAACGAATCTGCCGCTATCCCCTGCAC
CTCAACGAGATTATTAAGTCGGCATTGGAAAAGGGAGCCAAGGAAGGGAA
CGATACAGACGGTGCGAAGTCAGCTGGCAAGACAACTGACTATGAGCAAC
TCGATGTTACTGAACTAGACATACCCGACTCTCAAGATACTGTCAATTTG
GCGCTGGAAGCGATGCGCGGCATCACAGAAGCAGTCAATGAGGGCAAGCG
CCACAGCGAGACGATTGCAAGGCATCAAGCCAGCTTCCAAAACTTTAAGG
GCCCGCCGCTGCACTTGCATAGTGCTCGCTTCTTCCTGCAAGTCGATGCC
ACGCGGCAGAAACAGAATCTGTGGAACAGCAGCTATACTCTGTTTCTTTT
TGATAACCAGCTCGTTTACTGCAAGCGAGATATTATTAAGCGGAGCCACT
TCATCTACAAAGGACGCATTTTTCTCGATCGCTGTCGCGTGGTAAACGTG
AGGGATGGAAAAATGTTTGGGCACACCATTAAGAACTCCCTACGCATATA
TAGCGAGTCTCGAGACAAATGGTACGATTTTAGTTTCCGTTCGGCGAACC
GCAAGCATCGCTTCCTAAGCACTCTCGCCCTGGAGCGCCAGTTTGGTGGT
AAAGCTCTATACGTATCAGAGATGACTGGATTCGAGTACAATTACGAGGA
GCGGCCGGGCGATTACTCAGACCAATCAGATTACGATGCACAAGATTTTG
AATTAGCAACTGGGGTCACCAGTGGTGAGAGCTCACTGCCGGAGTCGCCG
GCCAAATCTACGTCTCGCCTGTGTGAGACACTGCCAAAAAAATCTCAGTC
CAGGGACGGAATATCCAGCGCTGAAAACTCTCAAATAGTCACTACCACAT
CGACAGGTTCGCTAGGAAGGCGGCATTTTGGCAATTGGTTCCGCAAGCCA
AAGAGCGCAAACTGCACTCCAAGTCAATCACCGACGCATAAGCCAAGCTT
CGACGCAGACGCTACGCTCACGGAAGCCCGGGTTGCTGCGATGGAACTGG
CTGAAGCCGCGGCCGCACTAGTGCCAACGGACAGCTCCTCAGCGTAAAAG
CTTTCTAGACCAT
BS20844.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:28:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoGEF3-RH | 3081 | CG43976-PH | 1..3081 | 17..3097 | 15405 | 100 | Plus |
| RhoGEF3-RM | 10557 | CG43976-PM | 7764..10557 | 304..3097 | 13970 | 100 | Plus |
| RhoGEF3-RL | 10560 | CG43976-PL | 7767..10560 | 304..3097 | 13970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:28:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoGEF3-RH | 3501 | CG43976-RH | 208..3289 | 17..3098 | 15410 | 100 | Plus |
| RhoGEF3-RM | 12307 | CG43976-RM | 8105..10899 | 304..3098 | 13975 | 100 | Plus |
| RhoGEF3-RL | 11114 | CG43976-RL | 8108..10902 | 304..3098 | 13975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:28:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 302749..303884 | 1963..3098 | 5680 | 100 | Plus |
| 3L | 28110227 | 3L | 300894..301681 | 361..1148 | 3940 | 100 | Plus |
| 3L | 28110227 | 3L | 301756..302301 | 1147..1692 | 2730 | 100 | Plus |
| 3L | 28110227 | 3L | 292899..293185 | 17..303 | 1435 | 100 | Plus |
| 3L | 28110227 | 3L | 302359..302522 | 1692..1855 | 820 | 100 | Plus |
| 3L | 28110227 | 3L | 302584..302691 | 1855..1962 | 540 | 100 | Plus |
| 3L | 28110227 | 3L | 298959..299016 | 304..361 | 290 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:28:21 has no hits.
BS20844.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-09 09:18:59 Download gff for
BS20844.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGEF3-RH | 208..3286 | 17..3095 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:50:58 Download gff for
BS20844.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGEF3-RH | 208..3286 | 17..3095 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:19:09 Download gff for
BS20844.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGEF3-RH | 208..3286 | 17..3095 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:19:09 Download gff for
BS20844.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 292899..293185 | 17..303 | 100 | -> | Plus |
| 3L | 298959..299016 | 304..361 | 100 | -> | Plus |
| 3L | 300895..301681 | 362..1148 | 100 | -> | Plus |
| 3L | 301758..302301 | 1149..1692 | 100 | -> | Plus |
| 3L | 302360..302522 | 1693..1855 | 100 | -> | Plus |
| 3L | 302585..302691 | 1856..1962 | 100 | -> | Plus |
| 3L | 302749..303881 | 1963..3095 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:50:58 Download gff for
BS20844.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 292899..293185 | 17..303 | 100 | -> | Plus |
| arm_3L | 298959..299016 | 304..361 | 100 | -> | Plus |
| arm_3L | 300895..301681 | 362..1148 | 100 | -> | Plus |
| arm_3L | 301758..302301 | 1149..1692 | 100 | -> | Plus |
| arm_3L | 302360..302522 | 1693..1855 | 100 | -> | Plus |
| arm_3L | 302585..302691 | 1856..1962 | 100 | -> | Plus |
| arm_3L | 302749..303881 | 1963..3095 | 100 | | Plus |
BS20844.pep Sequence
Translation from 16 to 3096
> BS20844.pep
MKMSITGADSGRASATELEESAVATMQLREPTTPPPPISGEDVFASRVSH
TTWYLPVEDSSSPPASSTNEARGASPDAEPREGDAAGDSSMSTSDEMPKP
GSNEMGTTSDCAASLSQQIKAVSSPTLSEPCLEEQPQKGTESTDVANTGS
SAGSGGLGVLQKFKRTLNNFNNKNQLHISPLSPAAVGNNAPKTKTSPTTT
TASIAPMITTTTASDPGSEAGDTSSGKYRFGPLIWRSSKERRKTKYNRRD
KCNSGDSGIQIELEQDEQYSRATMAVSRQDEPRAFALTNGSCGVALSKMR
AIRRTNSAKASSILGPFIVKTKIAKHLNIGESDKAERKAPESLPTRSLSQ
PNGLESYGMGRPDLEDSDSDSVASNEEAISFYPTTYAEVLYNFTAGGPQE
LGLERGMLIEILRKEVGPWWFGRIKKEETNLVEDILGPELGWFPKEFVRI
IHCPETDNFFIAHRAAADEAAAEEATARAEEGSVPVPVAAFAEDTDVTVT
TDQSNVTLIVIESPPTPSAPSVDFVAQPDHSTIIRRSAVRELLDTEVNYV
KLLAAICDGYLPAMSKRIDIFSPNSIRLIFSNITAIYKFQRKFLEALRRG
IEQNQVAKVFLKMHKGFLCYSTYCNAYPRALIELETYDRVKDARTILENC
RESQNLAELPLSAHLLAPVQRICRYPLHLNEIIKSALEKGAKEGNDTDGA
KSAGKTTDYEQLDVTELDIPDSQDTVNLALEAMRGITEAVNEGKRHSETI
ARHQASFQNFKGPPLHLHSARFFLQVDATRQKQNLWNSSYTLFLFDNQLV
YCKRDIIKRSHFIYKGRIFLDRCRVVNVRDGKMFGHTIKNSLRIYSESRD
KWYDFSFRSANRKHRFLSTLALERQFGGKALYVSEMTGFEYNYEERPGDY
SDQSDYDAQDFELATGVTSGESSLPESPAKSTSRLCETLPKKSQSRDGIS
SAENSQIVTTTSTGSLGRRHFGNWFRKPKSANCTPSQSPTHKPSFDADAT
LTEARVAAMELAEAAAALVPTDSSSA*
BS20844.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:24:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoGEF3-PH | 1026 | CG43976-PH | 1..1026 | 1..1026 | 5281 | 100 | Plus |
| RhoGEF3-PF | 1011 | CG43976-PF | 75..1011 | 90..1026 | 4802 | 99.6 | Plus |
| RhoGEF3-PA | 1011 | CG43976-PA | 75..1011 | 90..1026 | 4802 | 99.6 | Plus |
| RhoGEF3-PM | 3518 | CG43976-PM | 2589..3518 | 97..1026 | 4793 | 100 | Plus |
| RhoGEF3-PL | 3519 | CG43976-PL | 2590..3519 | 97..1026 | 4793 | 100 | Plus |
