BS20846.complete Sequence
3128 bp assembled on 2011-02-17
GenBank Submission: KX806231
> BS20846.complete
GAAGTTATCAGTCGACATGTCTGACGACTGGGATGATGAGCCCATTGTTG
ATACTCGCGGCGCCCGCGGTGGAGATTGGAGCGATGATGAGGACACGGCC
AAGAGCTTCAGCGGCGAAGCTGAAGGCGATGGTGTTGGAGGGAGCGGTGG
TGAAGGCGGCGGCTACCAAGGAGGAAATCGAGATGTGTTCGGAAGGATCG
GCGGAGGCAGAGGAGGAGGAGCTGGAGGTTATCGAGGAGGAAATCGAGAT
GGAGGGGGCTTCCACGGTGGACGTCGCGAGGGAGAAAGGGACTTCCGCGG
TGGAGAAGGCGGCTTCCGCGGTGGACAAGGCGGCTCCCGCGGTGGACAAG
GCGGCTCCCGCGGGGGACAAGGCGGCTTCCGTGGTGGAGAAGGCGGCTTC
CGCGGTCGGCTGTACGAAAACGAGGATGCTAAGGAACTGCCGCCGATCCC
ATCTAGCTGCGATAAGGATGAGGTGGGCGCATTCATCGATCAGCTGGACT
TGAGCAAGTACACGACCAGCCTAGCACTGATTCGAAAATTGCGTGACTAC
TTGCTGACTGCATTTAAGGCTTTGGTGAACCAAGCATGGGCTTCTCTCGA
GAAATTAGCTCAAGAAAAGCGTGCACAAAAGGCACATCAGATACGCGAAA
CAACAGATATGATGAATCGCCTTATGGAGGACATGGGCCGATTGATTCGT
GAAGGTGAACATGAGGAAGCAAATGGGATTGGGATGGGATTTCAAAGCAT
TGATGCGGATTGCAGAGCTGATTTGTCGCAATGGAGGAATTTACAGCAAG
TTGTGATGCCGCAATCTTCGGAGATCAGAGATGGACAAACAAACAGGACA
AGCGGTACTGAGGGCGGTCGATCAGGAGGTTTAACCGATGGCGATGACTT
AACCGAAATACAAAGCGCCGCATACGCCGTGTATCATCAGGTTTTGGATC
GAGGTTACCAAACGGGTCGACGGCTGTATGATGATAATCAAGGAGCATTG
AGAGAAGATTCTATTCCAACAGAAGACCGAGAACACCCAGAAAATAATCA
AGTGGATGGATCAACATATGGAGTGACTAGATTTCTGCACTGGCTAAGTG
AGAACTTTGTCACTCGGCATGAAATAAGGGCCGTACGTTTTGGCAGTCCG
CATATGGTTTTTCAATCTTATGACTGGCCAGAGTCTCCAAAGCAGCACAT
TTCGACGGTCCATCAAAAAGGCATATTTTATTCTCAGCCCTTAATTAGGA
CACGCATAATAGCCACTGTTGCGAGCGAGCCAAACAATTCGAGTAGTGGT
CAGCTCAGCAGTATGGTAAACTTGGCACGACATCAGCGGTCGCAAAATCA
GGAAACGCCAGATGGAATTTACGTTAGTCGCTACAATGCAACTGGAGATG
AGGAGACTCCCTGCTCCGCAACCGGAGTCCCCGGCAGAGTTGTGGCTCTG
CGTGCTTCGAGCACCCCAAATGAACATAGGAGCGATCCAGGCTTGTCTTT
TATACCCAATTTGACTTACGAAGATGGGACCATACCATCATTGGCAGCAG
GCGGCGCTGCATCGACACCGTTGGCTCCATCACTGCCAGCAGAGCATTCA
TTGGGGTTAGAAATGGATAGCAACACTTTGGTGGTACCAGCTGATGCGGA
TGAAACCCGCTTAGTCGGACATCCAGGATCAACAGTGGTTCGTTCTCGGC
TTGGAGGCCCTCCAGCATCAACACCTTTACTATCATTCCGACCTAGACTG
CCGGTCATTGACGAAGAGCATCATCTACGCTTTACCAGGGTGTCACGCGA
GCTGCAAATGAGTGTTGCTTTCCCGCCGGAAGAGACAACACTAAGCGAGC
AACGTGAGTGGGGCTCGATTTTCCGACCACGTGATGAAATGGTTAACTAT
GCCGAAGGTCCACCTCCTCGCCAAACACAAAGGGCGCGTCGTCGCTCGCG
TACACGCAGACGACGTAATCGTATCGCTTCAGCTGCCAGCCCGCAACTAA
CACCGGAACGAATTGTCCGTCGCGAGGAAGCCTTCCAAAGCAGCCGACAT
ATTGCAGCCACTTTTATGTCCAGCTTGCTACAAAATGCAGCTGGAGAAGT
GACGACGTCTTCAGGTCTGGCAGTAACCCGTTCAGTGAAAGAAATAACGA
CATCAGTCCATATCACCCGAAATGTACTACAAGAGGAGGTACCACCGACC
ACAGAAGCAACGACGACCTCCCTAGAAGTTGCACAGGCAACAGGGTATTC
GGATTCTGGGGCTTGTATGCAATCTGCAGCGTTCTCTCAAGATCTTCCTG
TAGTAGCTCCCTTGGAGATATCTGGAAATGCATCAAGTGACCAAGCATCA
TTTGATCAAGCTTTGGCCTTACTGCCTCCCATAAATTCCACTCCAATAGG
TCAGCATCCAATTGCTGTTTTCGGACCTAAAACCGAAATTGAAATTAAAC
CCCAAAAAATGGACATCTCTAATATGATGAATACATCGGTTCCACCAATG
CCAATGGAAGTCGACGAAGTTCCACTGGAGGTATCAAACACTTTGGCCAA
TATGAGCGATCACGCTTATGTGACTGATATACAGATACTACCGTCGTTGC
AACTCAATTCTTTGAATCTTGTTAGCACCAATATTACAGACAATGCAGTA
AATATCGCCCCATCGACATCAACAAATGATTTGCAAACGCCAAGTGACCG
CAGAACATCAATGCAAAATCAACTATATCGAGTGTCCATGAACGATTTGG
CATATATTTCACAACACGCTAATGTGGTTCGTCTGATGGTAGATCGTCAA
GAGGAACTAGGGGCACAGGTCAGCTCCCTGGGGCCTTTTAAGGAAAATAG
CCAAGGCGCGCTAAATTTTAGTACAATGCCCGCTGTCAAAGTCTACGATC
CACGTATAATTCAGAACATTCAGAAGGATAAGATGAGAGTAGTTCATGGG
CTCTTCGGTGCTCTTATCAGACAGTCCCAGGTTGATATGCACAATGCACC
ATTCATCCGAAATCGCAAGGATGCGTTGATGGCATATCGCTTTTTACTCG
AGCTTAAGACTGCAAATATTATAAGTCTTAGCTCGGATGGTAGATTTTTC
GGGCTGCTCTAAAAGCTTTCTAGACCAT
BS20846.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:51:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vas-RB | 3096 | CG43081-PB | 1..3096 | 17..3112 | 15480 | 100 | Plus |
| vas-RA | 1986 | CG43081-PA | 1..412 | 17..428 | 2060 | 100 | Plus |
| vas-RC | 1986 | CG43081-PC | 1..412 | 17..428 | 2060 | 100 | Plus |
| vas-RB | 3096 | CG43081-PB | 279..347 | 337..405 | 240 | 89.9 | Plus |
| vas-RB | 3096 | CG43081-PB | 321..389 | 295..363 | 240 | 89.9 | Plus |
| vas-RA | 1986 | CG43081-PA | 279..347 | 337..405 | 240 | 89.9 | Plus |
| vas-RA | 1986 | CG43081-PA | 321..389 | 295..363 | 240 | 89.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:51:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vas-RB | 3337 | CG43081-RB | 152..3247 | 17..3112 | 15480 | 100 | Plus |
| vas-RA | 2241 | CG43081-RA | 152..563 | 17..428 | 2060 | 100 | Plus |
| vas-RC | 2311 | CG43081-RC | 106..517 | 17..428 | 2060 | 100 | Plus |
| vas-RB | 3337 | CG43081-RB | 430..498 | 337..405 | 240 | 89.9 | Plus |
| vas-RB | 3337 | CG43081-RB | 472..540 | 295..363 | 240 | 89.9 | Plus |
| vas-RA | 2241 | CG43081-RA | 430..498 | 337..405 | 240 | 89.9 | Plus |
| vas-RA | 2241 | CG43081-RA | 472..540 | 295..363 | 240 | 89.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:51:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15070422..15072043 | 1491..3112 | 8110 | 100 | Plus |
| 2L | 23513712 | 2L | 15069033..15070096 | 428..1491 | 5320 | 100 | Plus |
| 2L | 23513712 | 2L | 15068481..15068870 | 39..428 | 1950 | 100 | Plus |
| 2L | 23513712 | 2L | 15068737..15068805 | 337..405 | 240 | 89.9 | Plus |
| 2L | 23513712 | 2L | 15068779..15068847 | 295..363 | 240 | 89.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:51:14 has no hits.
BS20846.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:41:32 Download gff for
BS20846.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vas-RB | 152..3245 | 17..3110 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:56:31 Download gff for
BS20846.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vas-RB | 152..3245 | 17..3110 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:56:09 Download gff for
BS20846.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vas-RB | 152..3245 | 17..3110 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:56:09 Download gff for
BS20846.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15068406..15068429 | 17..40 | 100 | -> | Plus |
| 2L | 15068483..15068870 | 41..428 | 100 | -> | Plus |
| 2L | 15069034..15070096 | 429..1491 | 100 | -> | Plus |
| 2L | 15070423..15072041 | 1492..3110 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:56:31 Download gff for
BS20846.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15068406..15068429 | 17..40 | 100 | -> | Plus |
| arm_2L | 15068483..15068870 | 41..428 | 100 | -> | Plus |
| arm_2L | 15069034..15070096 | 429..1491 | 100 | -> | Plus |
| arm_2L | 15070423..15072041 | 1492..3110 | 100 | | Plus |
BS20846.pep Sequence
Translation from 16 to 3111
> BS20846.pep
MSDDWDDEPIVDTRGARGGDWSDDEDTAKSFSGEAEGDGVGGSGGEGGGY
QGGNRDVFGRIGGGRGGGAGGYRGGNRDGGGFHGGRREGERDFRGGEGGF
RGGQGGSRGGQGGSRGGQGGFRGGEGGFRGRLYENEDAKELPPIPSSCDK
DEVGAFIDQLDLSKYTTSLALIRKLRDYLLTAFKALVNQAWASLEKLAQE
KRAQKAHQIRETTDMMNRLMEDMGRLIREGEHEEANGIGMGFQSIDADCR
ADLSQWRNLQQVVMPQSSEIRDGQTNRTSGTEGGRSGGLTDGDDLTEIQS
AAYAVYHQVLDRGYQTGRRLYDDNQGALREDSIPTEDREHPENNQVDGST
YGVTRFLHWLSENFVTRHEIRAVRFGSPHMVFQSYDWPESPKQHISTVHQ
KGIFYSQPLIRTRIIATVASEPNNSSSGQLSSMVNLARHQRSQNQETPDG
IYVSRYNATGDEETPCSATGVPGRVVALRASSTPNEHRSDPGLSFIPNLT
YEDGTIPSLAAGGAASTPLAPSLPAEHSLGLEMDSNTLVVPADADETRLV
GHPGSTVVRSRLGGPPASTPLLSFRPRLPVIDEEHHLRFTRVSRELQMSV
AFPPEETTLSEQREWGSIFRPRDEMVNYAEGPPPRQTQRARRRSRTRRRR
NRIASAASPQLTPERIVRREEAFQSSRHIAATFMSSLLQNAAGEVTTSSG
LAVTRSVKEITTSVHITRNVLQEEVPPTTEATTTSLEVAQATGYSDSGAC
MQSAAFSQDLPVVAPLEISGNASSDQASFDQALALLPPINSTPIGQHPIA
VFGPKTEIEIKPQKMDISNMMNTSVPPMPMEVDEVPLEVSNTLANMSDHA
YVTDIQILPSLQLNSLNLVSTNITDNAVNIAPSTSTNDLQTPSDRRTSMQ
NQLYRVSMNDLAYISQHANVVRLMVDRQEELGAQVSSLGPFKENSQGALN
FSTMPAVKVYDPRIIQNIQKDKMRVVHGLFGALIRQSQVDMHNAPFIRNR
KDALMAYRFLLELKTANIISLSSDGRFFGLL*
BS20846.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:17:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vas-PB | 1031 | CG43081-PB | 1..1031 | 1..1031 | 5331 | 100 | Plus |
| vas-PA | 661 | CG3506-PA | 1..140 | 1..140 | 772 | 98.6 | Plus |
| vas-PC | 661 | CG43081-PC | 1..140 | 1..140 | 772 | 98.6 | Plus |
| Fib-PA | 344 | CG9888-PA | 11..107 | 39..130 | 203 | 52 | Plus |
| CG5172-PD | 172 | CG5172-PD | 21..114 | 39..130 | 196 | 48.5 | Plus |
| Fib-PA | 344 | CG9888-PA | 27..109 | 41..125 | 195 | 51.8 | Plus |
| Fib-PA | 344 | CG9888-PA | 10..89 | 42..130 | 189 | 53.9 | Plus |
| Fib-PA | 344 | CG9888-PA | 11..109 | 15..118 | 183 | 44.4 | Plus |
| Fib-PA | 344 | CG9888-PA | 5..83 | 39..131 | 182 | 50.5 | Plus |
