BS20896.complete Sequence
4337 bp assembled on 2011-02-17
GenBank Submission: KX800865
> BS20896.complete
GAAGTTATCAGTCGACATGGATCAGGAGGTTATGGATTTCTTTGACTTCT
CGAAGGAGTTGAAGCGCGTGGCCGCCGCCCCGCAAGGCTACATCAGCAGC
GATCCGAGGCTAATGGCCACGAAGTTCAAATCATCCGAAGTGCCCAACCG
CGAGTTGATCGGCACCGACTATGTCAGCAAAATCGTCGCCAAGGAAAAGT
GTCTCCTGAACGGGACGCTGCTCAACGAACAGCCTCAAGGCAAACGCATT
CGAACGCTGGACGATTTGGACACCGACGATGAGGGGGAAGAGACCGAAAT
TCGCCGGGATGACGAGTACTACAAGAAGTTCAGATTCAATCTGAATCGCG
ACAAGAACTTGTCCATCTACGCCAAGCGCGAGGAAATATTGGCGGCCATC
AATGCTCATCCGGTAGTCATTATTAAGGGCGAAACAGGATGTGGCAAGAC
CACGCAGGTGCCCCAATACATTTTGGATGAGGCCTATAAAAGCGGTAAAT
ACTGCAACATTGTGGTGACACAACCCCGGCGCATAGCTGCCATCTCCATA
GCGAATAGAGTTTGCCAGGAGCGCGAGTGGCAGCAGAACACGGTGTGCAG
CTTCCAGGTGGGCCTGCACCGCCCGAACTCTTTGGAGGACACTCGTCTGT
TGTACTGCACCACCGGGGTGCTGCTGAACAATTTGATTAACAACAAGACG
TTGACCCACTACACCCACATTGTGCTGGACGAGGTGCATGAAAGAGACCA
GAACATGGATTTTCTTCTGATCGTGGTGCGTCGCTTGCTGGCCACGAACT
CGCGGCATGTAAAGATTATCCTGATGTCGGCCACCATCGATGCCAAGGAA
CTGTCCGACTACTTTACCACCACTAACTCAATTCCGCCAGTGATCACCAC
CAATCATCGACGTAAGCACTCGATCGAGAAGTTCTACCGTGACCAGCTCG
GCAGCATTATTTGGAATGAGGAAGATGTGGGACACCAGCAGGTGCCAGAA
ATCAACAAACACGGTTACAGGGCAGCGGTAAAGATCATAGTGATTATTGA
CAACATGGAACGGAAGGCTGCAATCCAGTCGCGGCAGAGCTATGACGAGG
CCCTGCGCTATGGAGCTGTGCTCATCTTTCTGCCAGGCATCTACGAAATC
GACACGATGGCAGAAAATCTTACTTGTATGCTGGAAAACGACCCCAACAT
TAAGGTCTCTATTGTTCGCTGTTTTTCGTTAATGACACCGGAAAACCAAC
GGGATGTCTTCAATCCCCCGCCTCCCGGTTTCCGCAAGATCATTCTGACC
ACAAACATTGCTGAGAGCTCCATCACGGTGCCAGATGTCTCATACGTTAT
TGACTTTTGTCTTGCCAAAGTAAAGGTAACCGATACGGCTAGCAGCTTCT
CTTCGCTCCGCTTAACCTGGGCGTCCAAAGCCAATTGTCGTCAGCGTGCC
GGCCGCGTTGGTCGTCTTCGTAGTGGACGCGTTTACCGTATGGTTAATAA
ACACTTCTATCAGAGGGAAATGCCCGAGTTTGGAATACCAGAAATGTTGC
GCTTGCCCTTGCAAAACTCGGTGCTCAAGGCCAAAGTGCTGAATATGGGA
TCACCGGTGGAAATCTTGGCATTGGCTCTATCTCCGCCGAATCTGTCGGA
CATACACAATACAATATTGCTTCTGAAAGAGGTGGGTGCTCTGTACTTAA
CAGTAGACGGCATCTACGACCCGTTGGATGGCGATCTTACCTACTGGGGC
ACAATCATGTCTCGGCTGCCGTTGGACACACGTCAGTCCCGGCTTATCAT
ATTGGGTTATATTTTTAACATGCTCGAAGAAGCTATTATTATAGCTGCTG
GCTTATCGACGCCTGGCTTGTTTGCGCACGAAGGTGGTAGGTCTCAATTA
GGCGATTCATTTTGGATGCACTATATCTTCTCCGATGGATCTGGCTCCGA
CTTGGTGGCCATTTGGCGCGTGTATCTGACATATTTGAACATTGTGGAAA
ATGGTCACGACCAGGAGTCTGCTATCCGTTGGGCCAAACGTTTCCACGTC
TCCTTGCGGTCACTTAAGGAGATACACTTGTTGGTGCAGGAACTGCGTGT
GCGATGCACGCATCTCGGTCTGATTCCGTTTCCTGTTAATCCTAACCAAA
TGATGGACGATCGTGAAAAAGCGATCATGCTCAAAGTGATCATTGCAGGT
GCCTTCTACCCAAACTACTTTACGCGTTCCAAAGAGTCGTGTGCAGACAC
AGATCGCAATATATACCAGACAATATCGGGCCACGATCCCTGCCGCACCG
TATATTTTACCAATTTTAAGCCTGCCTACATGGGCGAGTTGTACACTAGG
CGCATTAAGGAGCTATTTCAGGAGGTCAGGATTCCGCCGGAAAACATGGA
CGTTACTTTTCAAGAGGGTTCGCAAAAGGTCTTTGTCACTTTCAAACAGG
ATGACTGGATTGAAGGTTCATCTAAGTATGTTCCTGTGTCGGGCAGAGTT
CAAAGTGAGGTGTACAAGGCAGTTATGATGCGACAAAATCGTGTCGAACG
GCCAATCCACATAATGAATCCGAGTGCATTTATGAGCTACGTACAGCAGC
GAGGGATTGGAGATGTGATTGAGGGCCGTTGGATTCCACCCACAAAGCCT
TTAAACGTCGAGCTTCTTGCGCTGCCATCTGTCTTTGACAAAACTATTTC
AGGGTCGATTACTTGCATCGTCAACTGTGGCAAGTTCTTTTTTCAACCCC
AATCTTTTGAAGAGTGCATTCGAAATATGTCTGAAATTTTCAATGCTCCA
CAGCAACTAAGAAATTACGTAACTAACGCGAGTGCCATCGCAAAGGGCAT
GATGGTGTTGGCCAAACGCGATAGTTATTTCCAGCGCGCCACAGTGATCC
GGCCAGAGAATCAGAGCAATCGCCAACCAATGTTCTACGTTCGCTTCATC
GACTATGGTAATTGCACTTTGCTGCCCATGCAGCTAATGCGTTTGATGCC
GAGAGAGCTAACTGAACAGTACGGCGACCTTCCGCCACGTGTTTTTGAGT
GCAGGCTGGCAATGGTTCAGCCCTCTTCAGTGGTCAGTGGAAACAATAGG
TGGTCCACCGCGGCTAATGATATGCTCAAGACAGTGGCCCAATGCGGTCT
AATCGATATTGAGGTGTATTCGCTTTTCAATAATGTAGCAGCTGTTCTCA
TTCATATGAGAGATGGCATAATCAACGATAAGCTAGTAGAGCTTATGTTG
TGCCGTCGATCCGACGAAGATTATATGTCTAGAAAAGATCATGATTTCCG
TTTGCGACGTCAAGAATCTGCCCGGAACTTGAGCACGGCGCAGCGTCAAC
AGATCAATGAGGAATATCTGCGATCCTGTCAGCTGCCGCAAGACCACGAT
CTACCACCGCCTCCGCTGGAAAAGTGCAAGACCGTTGTAATGTTGAAAGG
ACCCAACAGTCCTTTGGAATGTACTATGCGATCCATTACTCGTGTGGGCT
TAAGTAAACGGGTGAATATAGACCATTTGTCCGTTAATGCACTTCTCCTG
GATGCTGATCCTCAAGATCACCACGATCATTTGATAGTGGCCCACGAAAT
CGCGGAGAGTAGAAACGGGCAGACACTGACAGCCCGTGGAACCACCCTGA
TGCCCAATGTGCAGGGATTCGGTGCTCTAATGGTTATGCTATTTAGTCCC
ACTATGCAACTTAAATGCAATAAAGAAGGCACATCATATGTCTCTGTTCT
GGGAGGATTGGGTTGTGACCCGGACACAAACGAGCCCTACTTCGCAGAGC
ATGACGTGTTGATTAATCTGGATGTCAACATTCTCGAAGATGATGTGATT
TTGATTAATCAAATTCGCTACTATATAGATAGTGTCTTCTTCAACTTTAA
GGAAGAAAACAATCCAGCTGTTAGCGTAAATGAACGTGTTTCTATATACA
CTCAGCTGCGTAGCCTTATAAATAGGCTCCTTTGCAAGGATCGTAGATAT
ATCGAAAGAAATATGAGCAATGCGGATTTTGAATGGGAAACCAATCCCGA
ACTACCACTGCCGAATGAACCTTTTGGCAAGAGGGCCATATTTCCGATGC
ACTCACTTACTGAGCTCCAAGAGGAAGACACGGGTCGCTTGGTGCAACTG
AGAGAGAACTGCAGCATGTTGCACAAATGGCGCAACTTCGAAGGCACTTT
ACCCCATATGACTTGCAAACTGTGCAATCAGTTGTTGGAATCGGTTCCCC
AGCTCCGTTTGCATCTCCTGACCATATTGCATCGTGATCGTGAAAAGCAA
ATCGACTATTGCAACCAATAAAAGCTTTCTAGACCAT
BS20896.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:07:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spn-E-RA | 4305 | CG3158-PA | 1..4305 | 17..4321 | 21525 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:07:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spn-E-RA | 4678 | CG3158-RA | 65..4369 | 17..4321 | 21525 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:07:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15842318..15843454 | 2717..3853 | 5685 | 100 | Plus |
| 3R | 32079331 | 3R | 15839696..15840432 | 455..1191 | 3685 | 100 | Plus |
| 3R | 32079331 | 3R | 15840530..15841182 | 1192..1844 | 3265 | 100 | Plus |
| 3R | 32079331 | 3R | 15841456..15842046 | 1978..2568 | 2955 | 100 | Plus |
| 3R | 32079331 | 3R | 15837737..15837983 | 214..460 | 1235 | 100 | Plus |
| 3R | 32079331 | 3R | 15843696..15843910 | 3974..4188 | 1075 | 100 | Plus |
| 3R | 32079331 | 3R | 15837483..15837680 | 17..214 | 990 | 100 | Plus |
| 3R | 32079331 | 3R | 15842103..15842250 | 2569..2716 | 740 | 100 | Plus |
| 3R | 32079331 | 3R | 15841269..15841405 | 1842..1978 | 685 | 100 | Plus |
| 3R | 32079331 | 3R | 15843974..15844106 | 4189..4321 | 665 | 100 | Plus |
| 3R | 32079331 | 3R | 15843510..15843637 | 3849..3976 | 625 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:07:24 has no hits.
BS20896.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:42:31 Download gff for
BS20896.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spn-E-RA | 47..4349 | 17..4319 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:36:07 Download gff for
BS20896.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spn-E-RA | 47..4349 | 17..4319 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:13:38 Download gff for
BS20896.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spn-E-RA | 65..4367 | 17..4319 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:13:38 Download gff for
BS20896.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15837738..15837980 | 215..457 | 100 | -> | Plus |
| 3R | 15837483..15837680 | 17..214 | 100 | -> | Plus |
| 3R | 15839699..15840432 | 458..1191 | 100 | -> | Plus |
| 3R | 15840530..15841182 | 1192..1844 | 100 | -> | Plus |
| 3R | 15841272..15841405 | 1845..1978 | 100 | -> | Plus |
| 3R | 15841457..15842046 | 1979..2568 | 100 | -> | Plus |
| 3R | 15842103..15842250 | 2569..2716 | 100 | -> | Plus |
| 3R | 15842318..15843454 | 2717..3853 | 100 | -> | Plus |
| 3R | 15843515..15843636 | 3854..3975 | 100 | -> | Plus |
| 3R | 15843698..15843910 | 3976..4188 | 100 | -> | Plus |
| 3R | 15843974..15844104 | 4189..4319 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:36:07 Download gff for
BS20896.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11663205..11663402 | 17..214 | 100 | -> | Plus |
| arm_3R | 11663460..11663702 | 215..457 | 100 | -> | Plus |
| arm_3R | 11665421..11666154 | 458..1191 | 100 | -> | Plus |
| arm_3R | 11666252..11666904 | 1192..1844 | 100 | -> | Plus |
| arm_3R | 11666994..11667127 | 1845..1978 | 100 | -> | Plus |
| arm_3R | 11667179..11667768 | 1979..2568 | 100 | -> | Plus |
| arm_3R | 11667825..11667972 | 2569..2716 | 100 | -> | Plus |
| arm_3R | 11668040..11669176 | 2717..3853 | 100 | -> | Plus |
| arm_3R | 11669237..11669358 | 3854..3975 | 100 | -> | Plus |
| arm_3R | 11669420..11669632 | 3976..4188 | 100 | -> | Plus |
| arm_3R | 11669696..11669826 | 4189..4319 | 100 | | Plus |
BS20896.pep Sequence
Translation from 16 to 4320
> BS20896.pep
MDQEVMDFFDFSKELKRVAAAPQGYISSDPRLMATKFKSSEVPNRELIGT
DYVSKIVAKEKCLLNGTLLNEQPQGKRIRTLDDLDTDDEGEETEIRRDDE
YYKKFRFNLNRDKNLSIYAKREEILAAINAHPVVIIKGETGCGKTTQVPQ
YILDEAYKSGKYCNIVVTQPRRIAAISIANRVCQEREWQQNTVCSFQVGL
HRPNSLEDTRLLYCTTGVLLNNLINNKTLTHYTHIVLDEVHERDQNMDFL
LIVVRRLLATNSRHVKIILMSATIDAKELSDYFTTTNSIPPVITTNHRRK
HSIEKFYRDQLGSIIWNEEDVGHQQVPEINKHGYRAAVKIIVIIDNMERK
AAIQSRQSYDEALRYGAVLIFLPGIYEIDTMAENLTCMLENDPNIKVSIV
RCFSLMTPENQRDVFNPPPPGFRKIILTTNIAESSITVPDVSYVIDFCLA
KVKVTDTASSFSSLRLTWASKANCRQRAGRVGRLRSGRVYRMVNKHFYQR
EMPEFGIPEMLRLPLQNSVLKAKVLNMGSPVEILALALSPPNLSDIHNTI
LLLKEVGALYLTVDGIYDPLDGDLTYWGTIMSRLPLDTRQSRLIILGYIF
NMLEEAIIIAAGLSTPGLFAHEGGRSQLGDSFWMHYIFSDGSGSDLVAIW
RVYLTYLNIVENGHDQESAIRWAKRFHVSLRSLKEIHLLVQELRVRCTHL
GLIPFPVNPNQMMDDREKAIMLKVIIAGAFYPNYFTRSKESCADTDRNIY
QTISGHDPCRTVYFTNFKPAYMGELYTRRIKELFQEVRIPPENMDVTFQE
GSQKVFVTFKQDDWIEGSSKYVPVSGRVQSEVYKAVMMRQNRVERPIHIM
NPSAFMSYVQQRGIGDVIEGRWIPPTKPLNVELLALPSVFDKTISGSITC
IVNCGKFFFQPQSFEECIRNMSEIFNAPQQLRNYVTNASAIAKGMMVLAK
RDSYFQRATVIRPENQSNRQPMFYVRFIDYGNCTLLPMQLMRLMPRELTE
QYGDLPPRVFECRLAMVQPSSVVSGNNRWSTAANDMLKTVAQCGLIDIEV
YSLFNNVAAVLIHMRDGIINDKLVELMLCRRSDEDYMSRKDHDFRLRRQE
SARNLSTAQRQQINEEYLRSCQLPQDHDLPPPPLEKCKTVVMLKGPNSPL
ECTMRSITRVGLSKRVNIDHLSVNALLLDADPQDHHDHLIVAHEIAESRN
GQTLTARGTTLMPNVQGFGALMVMLFSPTMQLKCNKEGTSYVSVLGGLGC
DPDTNEPYFAEHDVLINLDVNILEDDVILINQIRYYIDSVFFNFKEENNP
AVSVNERVSIYTQLRSLINRLLCKDRRYIERNMSNADFEWETNPELPLPN
EPFGKRAIFPMHSLTELQEEDTGRLVQLRENCSMLHKWRNFEGTLPHMTC
KLCNQLLESVPQLRLHLLTILHRDREKQIDYCNQ*
BS20896.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:23:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spn-E-PA | 1434 | CG3158-PA | 1..1434 | 1..1434 | 7491 | 100 | Plus |
| mle-PA | 1293 | CG11680-PA | 352..893 | 80..615 | 729 | 34.3 | Plus |
| mle-PC | 936 | CG11680-PC | 2..536 | 87..615 | 711 | 34.2 | Plus |
| CG8915-PB | 976 | CG8915-PB | 207..742 | 113..659 | 614 | 32.6 | Plus |
| l(1)G0007-PA | 1222 | CG32604-PA | 469..1051 | 64..694 | 584 | 29 | Plus |
