Clone BS20904 Report

Search the DGRC for BS20904

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:209
Well:4
Vector:pDNR-Dual
Associated Gene/TranscriptCG12438-RA
Protein status:BS20904.pep: full length peptide match
Sequenced Size:758

Clone Sequence Records

BS20904.complete Sequence

758 bp assembled on 2011-01-18

GenBank Submission: KX804814

> BS20904.complete
GAAGTTATCAGTCGACATGGCGAGCAATGAGAACGAGAATGGCATAGCGC
TGGTCAAGTTTGTAACATGGACCCTGCTCATTTTGGGCATCTGTTTGCTG
GCCGCCATTCCGCAATGGATGATCCTGTGTCTGTTTGGAGATGATGCCCT
CATATACACCATCGCCTGCTTTTTCGTGGGCTTCGTGCTGCTCGTCTGCA
TCCATTTGATTGAGCCGCTGAAGTACTGGAGGCCCTGGAACTATATCGTC
ATCGCCGTTTGCTACGAATTTATGACACTCGGGGCAGGAAGTTTTCTAAT
GAACTGGCGTCTGGTTTGCTCCATTGTGACGATGGCCACGGCACTGCTTT
TCCTCGGTATCACGCTGCTCATTTGTGCCGTTCTAATTAGCACTGGATTT
TATATGAACCCCTTCAAACTGGCCGTTGTGGGAGGAATGCTATTCGTTCT
GGCATTCTGTATTGAACTTATGAATATCCTGCTAGCGTGGAGGTATTGGC
AGGATGTGGCTATCGGTGTCTTCCTTGTCAGTGTAGTTATTTTGGTCATC
TCCCACGTGTTGATCACCTACATCAGCTTCGAGTACCTGGTCAGAGATGA
CACCATCTTGGTCGCCATAGTGCTCTATATCGCCTATATACTCTTCCTGA
TCGGCAGTCGCATTTCCATCATATATATCAAGGGAAACGCCGATCACTCC
GCTACAGCGACCACTTCAACCCCCTATGACGAATATGACTAAAAGCTTTC
TAGACCAT

BS20904.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:14:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG12438-RA 726 CG12438-PA 1..726 17..742 3630 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:14:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG12438-RA 925 CG12438-RA 116..841 17..742 3630 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:14:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8752400..8753125 17..742 3630 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:14:26 has no hits.

BS20904.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:39:26 Download gff for BS20904.complete
Subject Subject Range Query Range Percent Splice Strand
CG12438-RA 96..819 17..740 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:51:23 Download gff for BS20904.complete
Subject Subject Range Query Range Percent Splice Strand
CG12438-RA 116..839 17..740 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:59:28 Download gff for BS20904.complete
Subject Subject Range Query Range Percent Splice Strand
CG12438-RA 116..839 17..740 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:59:28 Download gff for BS20904.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8752400..8753123 17..740 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:51:23 Download gff for BS20904.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8752400..8753123 17..740 100   Plus

BS20904.pep Sequence

Translation from 16 to 741

> BS20904.pep
MASNENENGIALVKFVTWTLLILGICLLAAIPQWMILCLFGDDALIYTIA
CFFVGFVLLVCIHLIEPLKYWRPWNYIVIAVCYEFMTLGAGSFLMNWRLV
CSIVTMATALLFLGITLLICAVLISTGFYMNPFKLAVVGGMLFVLAFCIE
LMNILLAWRYWQDVAIGVFLVSVVILVISHVLITYISFEYLVRDDTILVA
IVLYIAYILFLIGSRISIIYIKGNADHSATATTSTPYDEYD*

BS20904.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:03:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG12438-PA 241 CG12438-PA 1..241 1..241 1247 100 Plus