BS20906.complete Sequence
1049 bp assembled on 2011-01-18
GenBank Submission: KX802508
> BS20906.complete
GAAGTTATCAGTCGACATGATGAATAACATCTTGGTCTTAATAGGCTTCT
CGAGTGTTATGCTCGTTGCTGGCTTAGATGATATGAACTGTTTTTCCCTG
CAAAACGAAATTTGTCCCAATGCCAACATTTCCTTTTGGCTATACACAAA
AGAAAATCAGGAGGGAACTAAGCTTTCAGTTTTTGAACTTAATCGTTTTG
AATTTTATCACCACAAACCGCTCAAGGTTCTGATCCATGGATTCAACGGG
CACCGCGATTTCAGTCCCAATACCCAGCTACGTCCGCTGTTCCTGACACA
GGATTACAATTTGATATCCTTGGATTATCCAAAACTAGCCTATGAACCCT
GCTATACGGAAGCGGTGCACAATGCCAAATACGTAGCTCGCTGTACTGCT
CAGTTGCTACGAGTACTCCTCGAGAGCGGATTGGTCAAAATTGAGGATCT
GCACCTAATTGGCTTGGGCTTAGGTGCCCATGTCGCAGGCTTCATTGGGC
AGTTTCTTCCGGAACACAAGCTGGAGCATATTACAGCCCTCGATCCGGCA
AAACCATTTTACATGGTCAAGGATCCGGCTCTAAAGCTCGATCCCACTGA
TGCCAAGTTCGTGGACGTCGTGCACACGGATGTCACGATGCTTGGCTTAC
TGGATGCAGTGGGTCACGTGGACTTCTACTTGAACATGGGTGTATCACAG
CCCAACTGCGGACCCATTAATAAGATGGAGACTCATTTCTGCTACCATAA
CCGAGCAGCAGACTATTATGCCGAGTCTATTTCGTCACCTTCTGGATTCT
ATGGCTTCTACTGTCCCAATTTTAAAAGCTTCGCAAAGGGAATTTGCATT
CCTGATAAAAATATAGAGCTGATGGGTTTTCACGTGGATCCGAAAGCCAG
AGGCAGGTATTTTCTGGATACCAATAATGGTCCTCCTTATGCCAAGGGAG
AGAACTTTACCTCAATAAGCCGCCAACTAAAAGGTCGAACTTTCGTGAAC
GATGATATTATAGATAAATTGATTGGAACGTAGAAGCTTTCTAGACCAT
BS20906.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:14:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14034-RC | 1017 | CG14034-PC | 1..1017 | 17..1033 | 5085 | 100 | Plus |
| CG14034-RB | 1017 | CG14034-PB | 1..1017 | 17..1033 | 5085 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:14:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14034-RC | 1139 | CG14034-RC | 29..1045 | 17..1033 | 5085 | 100 | Plus |
| CG14034-RB | 1116 | CG14034-RB | 29..1045 | 17..1033 | 5085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:14:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5215705..5216282 | 725..148 | 2890 | 100 | Minus |
| 2L | 23513712 | 2L | 5215474..5215642 | 894..726 | 845 | 100 | Minus |
| 2L | 23513712 | 2L | 5215283..5215421 | 1033..895 | 695 | 100 | Minus |
| 2L | 23513712 | 2L | 5216335..5216440 | 147..42 | 530 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:14:30 has no hits.
BS20906.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:39:27 Download gff for
BS20906.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14034-RB | 20..1036 | 17..1033 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:51:24 Download gff for
BS20906.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14034-RB | 20..1036 | 17..1033 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:59:29 Download gff for
BS20906.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14034-RB | 29..1045 | 17..1033 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:59:29 Download gff for
BS20906.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5215283..5215421 | 895..1033 | 100 | <- | Minus |
| 2L | 5215474..5215642 | 726..894 | 100 | <- | Minus |
| 2L | 5215705..5216282 | 148..725 | 100 | <- | Minus |
| 2L | 5216335..5216437 | 45..147 | 100 | <- | Minus |
| 2L | 5216487..5216514 | 17..44 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:51:24 Download gff for
BS20906.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5215283..5215421 | 895..1033 | 100 | <- | Minus |
| arm_2L | 5215474..5215642 | 726..894 | 100 | <- | Minus |
| arm_2L | 5215705..5216282 | 148..725 | 100 | <- | Minus |
| arm_2L | 5216335..5216437 | 45..147 | 100 | <- | Minus |
| arm_2L | 5216487..5216514 | 17..44 | 100 | | Minus |
BS20906.pep Sequence
Translation from 16 to 1032
> BS20906.pep
MMNNILVLIGFSSVMLVAGLDDMNCFSLQNEICPNANISFWLYTKENQEG
TKLSVFELNRFEFYHHKPLKVLIHGFNGHRDFSPNTQLRPLFLTQDYNLI
SLDYPKLAYEPCYTEAVHNAKYVARCTAQLLRVLLESGLVKIEDLHLIGL
GLGAHVAGFIGQFLPEHKLEHITALDPAKPFYMVKDPALKLDPTDAKFVD
VVHTDVTMLGLLDAVGHVDFYLNMGVSQPNCGPINKMETHFCYHNRAADY
YAESISSPSGFYGFYCPNFKSFAKGICIPDKNIELMGFHVDPKARGRYFL
DTNNGPPYAKGENFTSISRQLKGRTFVNDDIIDKLIGT*
BS20906.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:03:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14034-PC | 338 | CG14034-PC | 1..338 | 1..338 | 1817 | 100 | Plus |
| CG14034-PB | 338 | CG14034-PB | 1..338 | 1..338 | 1817 | 100 | Plus |
| CG34447-PA | 389 | CG34447-PA | 22..335 | 17..330 | 621 | 41.8 | Plus |
| CG34447-PB | 389 | CG34447-PB | 22..335 | 17..330 | 621 | 41.8 | Plus |
| CG13282-PB | 484 | CG13282-PB | 72..355 | 33..312 | 546 | 38.2 | Plus |
