BS20908.complete Sequence
440 bp assembled on 2011-01-18
GenBank Submission: KX803714
> BS20908.complete
GAAGTTATCAGTCGACATGGCATCAGGTTTGCAGCGGGTTAACGAAAATG
AGATGAAGGCAATGGATGCCAATAGGTATGCCACCAAGAAGACGATCGCC
CAGGGCATGCTGGACATCGCCCTGCTGACCGCCAATGCCTCGCAGCTGAA
GTACATCCTCCAGGTGGGCGAACAGCACCAGTTCTACAAGCTGATGCTGA
TCCTGATCAGTCTGTCCATAGTCATGCAGGTGGCTGCTGGACTCTTGCTG
GTCATTCAGTCCCTCATCAATATGCATAATACCAAGGATCGAAATCGGGG
CTTCGCCATCAACCACTTCATAGATGCCTTCATATTCCTGTCCGTGTTTT
GTGACATCATGAAGATGAATTTTGGACTGGATCCGGCGGTTCCTCACACA
GATGTGGAACTTCTGAAGCCCTGAAAGCTTTCTAGACCAT
BS20908.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:14:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NijC-RB | 408 | CG14394-PB | 1..408 | 17..424 | 2040 | 100 | Plus |
| NijC-RG | 393 | CG14394-PG | 22..393 | 53..424 | 1860 | 100 | Plus |
| NijC-RC | 411 | CG14394-PC | 1..215 | 17..231 | 1075 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:14:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NijC-RB | 770 | CG14394-RB | 243..651 | 17..425 | 2045 | 100 | Plus |
| NijC-RG | 542 | CG14394-RG | 51..423 | 53..425 | 1865 | 100 | Plus |
| NijC-RC | 969 | CG14394-RC | 243..457 | 17..231 | 1075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:14:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12697062..12697260 | 227..425 | 995 | 100 | Plus |
| 3R | 32079331 | 3R | 12696121..12696302 | 51..232 | 910 | 100 | Plus |
| 3R | 32079331 | 3R | 12695371..12695406 | 17..52 | 180 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:14:35 has no hits.
BS20908.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:39:27 Download gff for
BS20908.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14394-RB | 226..632 | 17..423 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:51:25 Download gff for
BS20908.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NijC-RB | 243..649 | 17..423 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:59:30 Download gff for
BS20908.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NijC-RB | 243..649 | 17..423 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:59:30 Download gff for
BS20908.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12695371..12695406 | 17..52 | 100 | -> | Plus |
| 3R | 12696123..12696299 | 53..229 | 100 | -> | Plus |
| 3R | 12697065..12697258 | 230..423 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:51:25 Download gff for
BS20908.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8521093..8521128 | 17..52 | 100 | -> | Plus |
| arm_3R | 8521845..8522021 | 53..229 | 100 | -> | Plus |
| arm_3R | 8522787..8522980 | 230..423 | 100 | | Plus |
BS20908.pep Sequence
Translation from 16 to 423
> BS20908.pep
MASGLQRVNENEMKAMDANRYATKKTIAQGMLDIALLTANASQLKYILQV
GEQHQFYKLMLILISLSIVMQVAAGLLLVIQSLINMHNTKDRNRGFAINH
FIDAFIFLSVFCDIMKMNFGLDPAVPHTDVELLKP*
BS20908.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:03:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NijC-PB | 135 | CG14394-PB | 1..135 | 1..135 | 675 | 100 | Plus |
| NijC-PG | 130 | CG14394-PG | 8..130 | 13..135 | 616 | 100 | Plus |
| NijC-PD | 138 | CG14394-PD | 1..122 | 1..122 | 398 | 66.4 | Plus |
| NijC-PC | 136 | CG14394-PC | 1..117 | 1..114 | 378 | 70.1 | Plus |
| NijC-PF | 133 | CG14394-PF | 8..117 | 13..122 | 339 | 62.7 | Plus |
