BS20909.complete Sequence
1301 bp assembled on 2011-01-28
GenBank Submission: KX800766
> BS20909.complete
GAAGTTATCAGTCGACATGAAGTTAACAACCTGTCAAATTGCTAAAGTAT
TTCCGCTGTTGACAGCCTTCTTCTTCCTCAATTCTCCCAGCGCAGCCTCA
TTATCCTTCGGTTTGAGTCCCACCTTCGCCTCCGCCTCCGCCTCCAGCTC
CTTGTCCTCGTCATCGTCCTCGTCCTCCCACTTTCACTCAGAAAAACCCC
TCCACTCGGATGTACTCGTCCTGCGAGCGGCCAAGCCATCCAGGGCCATT
GCAACAAGCGCAGATGCGGCTACGCGGTCTGTGCCAGCGTCAGCGGCAGA
AACAACACTTGGCAGCAAGTCAATTTGGCCGACAGCTATACAAACAAAAA
GTCCACGTAATGCGCGTGAAGCTGGACGTCACAAACGTCAAATGCAAAAG
CCCGCAATCCAGCAGCAACCACTGCAGCAGCAGCAACAGCGCATTAATCC
CCCGCAGCAAAAGCGACAGCAGCAGCAGCAGCAGCAGCAGCAAGTGCAAC
ATCAGGCTCAACGAGTGGGCGTTTTAATACCTCCTTCGCTGCACGTTGAT
TTGACGCATGTGCAACAGGGCTTTCAGAATTTCCTTGACTTTTTCCAACT
GCATTTATTTAATGTCACCGTCGATTTTCTGCGTGATGTGGACTTAAGCG
GCTTCATTAAATTACTCGAGCTGCCCAAGTACACGAGCGTTATAAAGACT
TTAAATGCGGGCATTATGGTAGCCAGCCACGTGGACGTGGACCAAAATTC
CACTATCTACATTGGCACGCCCAGCCAGCCACGTCAGCAACATCGGCTGC
ATTCAAAGCAGGAGCAGGAGCCCCATCGTCATCATCATGAGGACTCCAAA
GCAAAACAGTTTCCAGCGGGCGAGGAGGAATCCCATTCATCGGGCGAGAC
CGAGGAAAATCATTGGAACGACGCCCGCATCTTCTCGGGTCACTGTCATC
AGCTGGCGGAGCAACTGGCCCTCGATTTCAATAAGACCGTCGTCCTGTGG
CCCTGTCCGCGAATGAAAATCTCCAGCAATTTTCTTCCGTCATTCGAAGC
AATTTCCCTAGCGGTACAAAGCATTTCCACCAAGTTGAACTGGTCGCAAG
TTGATATCTATATTGGCGCTGCACACCGCTTCATCGGACTGCCAGAAATA
GAAAAGAACCATCTTGGGGATTTAGATCCCGGTCGAACCTATCTACTTGT
ATCTATGAGTGCCACCGCCACTCTCCTGGAATTCACAATCAGCTCTGTTG
CCTCTTGTTGTCAAAAAATTGCCGACCAGACATAGAAGCTTTCTAGACCA
T
BS20909.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:31:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34357-RB | 1269 | CG34357-PB | 1..1269 | 17..1285 | 6315 | 99.8 | Plus |
| CG34357-RD | 5058 | CG34357-PD | 1..1102 | 17..1118 | 5480 | 99.8 | Plus |
| CG34357-RC | 5058 | CG34357-PC | 1..1102 | 17..1118 | 5480 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:31:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34357-RB | 2287 | CG34357-RB | 698..1966 | 17..1285 | 6315 | 99.8 | Plus |
| CG34357-RD | 7216 | CG34357-RD | 698..1799 | 17..1118 | 5480 | 99.8 | Plus |
| CG34357-RC | 6633 | CG34357-RC | 698..1799 | 17..1118 | 5480 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:31:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4537805..4538429 | 641..17 | 3095 | 99.7 | Minus |
| 3R | 32079331 | 3R | 4534149..4534526 | 1018..641 | 1890 | 100 | Minus |
| 3R | 32079331 | 3R | 4514953..4515120 | 1285..1118 | 840 | 100 | Minus |
| 3R | 32079331 | 3R | 4522988..4523087 | 1118..1019 | 500 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 22:31:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 574..599 | 177..152 | 112 | 92.3 | Minus |
BS20909.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-14 14:31:44 Download gff for
BS20909.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34357-RB | 698..1966 | 17..1285 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:00:44 Download gff for
BS20909.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34357-RB | 698..1966 | 17..1285 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:03:20 Download gff for
BS20909.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34357-RB | 698..1966 | 17..1285 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:03:20 Download gff for
BS20909.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4514953..4515119 | 1119..1285 | 100 | <- | Minus |
| 3R | 4522988..4523087 | 1019..1118 | 100 | <- | Minus |
| 3R | 4534149..4534525 | 642..1018 | 100 | <- | Minus |
| 3R | 4537805..4538429 | 17..641 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:00:44 Download gff for
BS20909.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 340675..340841 | 1119..1285 | 100 | <- | Minus |
| arm_3R | 348710..348809 | 1019..1118 | 100 | <- | Minus |
| arm_3R | 359871..360247 | 642..1018 | 100 | <- | Minus |
| arm_3R | 363527..364151 | 17..641 | 99 | | Minus |
BS20909.pep Sequence
Translation from 16 to 1284
> BS20909.pep
MKLTTCQIAKVFPLLTAFFFLNSPSAASLSFGLSPTFASASASSSLSSSS
SSSSHFHSEKPLHSDVLVLRAAKPSRAIATSADAATRSVPASAAETTLGS
KSIWPTAIQTKSPRNAREAGRHKRQMQKPAIQQQPLQQQQQRINPPQQKR
QQQQQQQQQVQHQAQRVGVLIPPSLHVDLTHVQQGFQNFLDFFQLHLFNV
TVDFLRDVDLSGFIKLLELPKYTSVIKTLNAGIMVASHVDVDQNSTIYIG
TPSQPRQQHRLHSKQEQEPHRHHHEDSKAKQFPAGEEESHSSGETEENHW
NDARIFSGHCHQLAEQLALDFNKTVVLWPCPRMKISSNFLPSFEAISLAV
QSISTKLNWSQVDIYIGAAHRFIGLPEIEKNHLGDLDPGRTYLLVSMSAT
ATLLEFTISSVASCCQKIADQT*
BS20909.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:04:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34357-PB | 422 | CG34357-PB | 1..422 | 1..422 | 2167 | 100 | Plus |
| CG34357-PD | 1685 | CG34357-PD | 1..392 | 1..391 | 1891 | 95.2 | Plus |
| CG34357-PC | 1685 | CG34357-PC | 1..392 | 1..391 | 1891 | 95.2 | Plus |
