Clone BS20911 Report

Search the DGRC for BS20911

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:209
Well:11
Vector:pDNR-Dual
Associated Gene/TranscriptAndorra-RA
Protein status:BS20911.pep: full length peptide match
Sequenced Size:782

Clone Sequence Records

BS20911.complete Sequence

782 bp assembled on 2011-01-18

GenBank Submission: KX805262

> BS20911.complete
GAAGTTATCAGTCGACATGAATCGATATCATGAACTCAGCATGTCGTGGG
AAATGCTGCGCGATCTCTACGAGACCTGGCTAATCCTGGCCATTGGCATG
TTGGTGCGCTGGAATCGCTGGCGTCCGTTGATCCATGGCATGGTATCGCC
ACTGGATCCATCGCTTAAGCACATCGTGGGCGACAATGAACGCTGGGCGG
GAGTCTACTTTGGATGCGGCACACTCATGACCATCATGCAGTATCGATCA
CTTTGGGTGCGCCGGTGTCGTCACCGCGTCCACATCCTGATGCTGCTGTC
CGAAATAATGCTACTGCTCCAGCTGGTGCACTGGATCGACTGCCAGCTGT
GGCAATCCTTTCTGAGCCTCTTCGAGGAGCTCTTCATCGCCCTGGGACGC
GGTCAATGGGGCTCCTGGATCTTTTGCTGTCCGGCCGCAGTGCGCAATCT
GTTCCTGCGTGGCGATGTCTTCGATGTGTTCCGCTTGCTCGCCTCGTTCG
CCATCTTCGCCGTGGCCCTAAACTCGACAGCTGGTGAATGGCGGGTGTCC
TTGGACTTCCTGCTAATCGGCTATTTCCCAAAAACTTCACTCTGGAGGCA
GTCGCTCTATGTGGAATATAGGAGTAAGGGTTTCGAGCCCACGGGCTCGT
ACGTACTGCTACCACTTCCCCCACCCGAGCTCCTCATCTACAAGCGTATG
TGTCGCCTGTGTCTGCAGCAACTTGAAACGAATCCCACTCACCAAAAGAT
TCAGATGCCTTGTTAAAAGCTTTCTAGACCAT

BS20911.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:14:10
Subject Length Description Subject Range Query Range Score Percent Strand
Andorra-RA 750 CG12611-PA 1..750 17..766 3750 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:14:11
Subject Length Description Subject Range Query Range Score Percent Strand
Andorra-RA 947 CG12611-RA 39..789 17..767 3755 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:14:08
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18178684..18179434 767..17 3755 100 Minus
Blast to na_te.dros performed 2014-11-26 16:14:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6740..6885 429..285 115 54.1 Minus

BS20911.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:39:24 Download gff for BS20911.complete
Subject Subject Range Query Range Percent Splice Strand
Andorra-RA 39..786 17..764 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:51:14 Download gff for BS20911.complete
Subject Subject Range Query Range Percent Splice Strand
Andorra-RA 39..786 17..764 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:59:21 Download gff for BS20911.complete
Subject Subject Range Query Range Percent Splice Strand
Andorra-RA 39..786 17..764 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:59:21 Download gff for BS20911.complete
Subject Subject Range Query Range Percent Splice Strand
X 18178687..18179434 17..764 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:51:14 Download gff for BS20911.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 18072720..18073467 17..764 100   Minus

BS20911.pep Sequence

Translation from 16 to 765

> BS20911.pep
MNRYHELSMSWEMLRDLYETWLILAIGMLVRWNRWRPLIHGMVSPLDPSL
KHIVGDNERWAGVYFGCGTLMTIMQYRSLWVRRCRHRVHILMLLSEIMLL
LQLVHWIDCQLWQSFLSLFEELFIALGRGQWGSWIFCCPAAVRNLFLRGD
VFDVFRLLASFAIFAVALNSTAGEWRVSLDFLLIGYFPKTSLWRQSLYVE
YRSKGFEPTGSYVLLPLPPPELLIYKRMCRLCLQQLETNPTHQKIQMPC*

BS20911.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:03:05
Subject Length Description Subject Range Query Range Score Percent Strand
Andorra-PA 249 CG12611-PA 1..249 1..249 1357 100 Plus