Clone BS20917 Report

Search the DGRC for BS20917

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:209
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptCG16739-RA
Protein status:BS20917.pep: full length peptide match
Sequenced Size:539

Clone Sequence Records

BS20917.complete Sequence

539 bp assembled on 2011-01-18

GenBank Submission: KX805527

> BS20917.complete
GAAGTTATCAGTCGACATGAAGTTCTATCCGAATGCAGATGTCTGGTTCT
GTGTGGACAAGACCAGCTGCTTGAACAGCTATCAAAAGTATCCACCCACG
CACAGCTGGAAGATTCACGATCGGACCACCGCGCGGGAAATGTACTATTG
GCGCGACATCGAGGGCGTGAAGAAGACGGAGATCAAGCTTAAGGATCTGT
ACTTCACCAATTGGCCCAAAACCCGCATCCGTCCACAGGCCTGCTTGGGA
TTGCTCTATGCCACGGGCAACAGATTCATCCGACTGACCAAGGCACCACC
AGCGGGCTTCAAGTGTGCACCACTGCCCGTCAATCTGGCCACCGCTCGAA
TTGTCAAAGTGGAGCTGCGCAAGAAGGCGAAGCGCGAAAAACAGGCAGCT
AAAAAGGCTAAAAAGGAAGCGAAGAAGGCCAAGAAGGCGGGCAAAAAGGG
CAAAGGAAAGGGCGGTAATGGCGATCTTAAGCCAAAGGTCATTAGGACAT
ACGAAGACGCCGAGAAAGCATAAAAGCTTTCTAGACCAT

BS20917.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:15:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG16739-RA 507 CG16739-PA 1..507 17..523 2535 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:15:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG16739-RA 695 CG16739-RA 114..621 16..523 2540 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:15:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20342106..20342449 16..359 1720 100 Plus
2R 25286936 2R 20342510..20342675 358..523 830 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:15:01 has no hits.

BS20917.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:39:31 Download gff for BS20917.complete
Subject Subject Range Query Range Percent Splice Strand
CG16739-RA 80..584 17..521 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:51:37 Download gff for BS20917.complete
Subject Subject Range Query Range Percent Splice Strand
CG16739-RA 115..619 17..521 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:59:42 Download gff for BS20917.complete
Subject Subject Range Query Range Percent Splice Strand
CG16739-RA 115..619 17..521 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:59:42 Download gff for BS20917.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20342107..20342449 17..359 100 -> Plus
2R 20342512..20342673 360..521 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:51:37 Download gff for BS20917.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16229612..16229954 17..359 100 -> Plus
arm_2R 16230017..16230178 360..521 100   Plus

BS20917.pep Sequence

Translation from 16 to 522

> BS20917.pep
MKFYPNADVWFCVDKTSCLNSYQKYPPTHSWKIHDRTTAREMYYWRDIEG
VKKTEIKLKDLYFTNWPKTRIRPQACLGLLYATGNRFIRLTKAPPAGFKC
APLPVNLATARIVKVELRKKAKREKQAAKKAKKEAKKAKKAGKKGKGKGG
NGDLKPKVIRTYEDAEKA*

BS20917.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:03:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG16739-PA 168 CG16739-PA 1..168 1..168 904 100 Plus