BS20920.complete Sequence
668 bp assembled on 2011-01-18
GenBank Submission: KX801612
> BS20920.complete
GAAGTTATCAGTCGACATGCGATTCGCGCCAAGCTTGAGCCTCAAATCAA
CTAGAGGAGTTCATCAGTCGGATACGGAAGTGAGCAAGATCATGAGGTCC
TTGGATGTGATACCAGATGTAATACACATCGGACCGCAGGAGTTTCTTAA
TGTTACTTACCACGGGCATTTAGCAGCACATTGTGGAAAGGTACTGGAAC
CCATGCAAGTGCGTGATGAACCCTCCGTAAAGTGGCCCTCGGCACCGGAA
AACTACTACGCCCTGCTGATGGTGGATCCGGACGTACCCAATGCTATAAC
ACCCACGCACCGGGAGTTCCTACACTGGATGGTCCTCAACATACCCGGCA
ATCTGTTGGCCCTTGGGGACGTGCGCGTGGGATACATGGGTGCCACTCCG
CTGAAGGGGACCGGAACCCATCGGTTCGTCTTCCTGCTCTACAAACAGAG
GGACTACACCAAGTTTGACTTCCCGAAACTGCCGAAGCACTCGGTTAAGG
GTCGCAGTGGCTTTGAAACCAAGCGGTTCGCAAAGAAATACAGATTTGGC
CATCCGGTAGCTGGGAACTTCTTCACATCCCAATGGAGCCCCGATGTCCC
ATCCCTTATCAAAGCCATCTCGCACAATGCCCGTCAAGTAGCACACTTTT
GAAAGCTTTCTAGACCAT
BS20920.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:15:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17917-RA | 636 | CG17917-PA | 1..636 | 17..652 | 3180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:15:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17917-RA | 706 | CG17917-RA | 33..670 | 16..653 | 3190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:15:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6342336..6342837 | 152..653 | 2510 | 100 | Plus |
3R | 32079331 | 3R | 6342000..6342137 | 16..153 | 690 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:15:09 has no hits.
BS20920.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:39:32 Download gff for
BS20920.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17917-RA | 34..668 | 17..651 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:51:42 Download gff for
BS20920.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17917-RA | 34..668 | 17..651 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:59:45 Download gff for
BS20920.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17917-RA | 34..668 | 17..651 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:59:45 Download gff for
BS20920.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6342001..6342135 | 17..151 | 100 | -> | Plus |
3R | 6342336..6342835 | 152..651 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:51:42 Download gff for
BS20920.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2167723..2167857 | 17..151 | 100 | -> | Plus |
arm_3R | 2168058..2168557 | 152..651 | 100 | | Plus |
BS20920.pep Sequence
Translation from 16 to 651
> BS20920.pep
MRFAPSLSLKSTRGVHQSDTEVSKIMRSLDVIPDVIHIGPQEFLNVTYHG
HLAAHCGKVLEPMQVRDEPSVKWPSAPENYYALLMVDPDVPNAITPTHRE
FLHWMVLNIPGNLLALGDVRVGYMGATPLKGTGTHRFVFLLYKQRDYTKF
DFPKLPKHSVKGRSGFETKRFAKKYRFGHPVAGNFFTSQWSPDVPSLIKA
ISHNARQVAHF*
BS20920.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:03:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17917-PA | 211 | CG17917-PA | 1..211 | 1..211 | 1134 | 100 | Plus |
CG17919-PA | 202 | CG17919-PA | 20..202 | 22..204 | 417 | 44.3 | Plus |
CG10298-PA | 187 | CG10298-PA | 13..184 | 31..202 | 413 | 44.8 | Plus |
CG6180-PA | 257 | CG6180-PA | 75..255 | 21..201 | 401 | 44.2 | Plus |
a5-PA | 210 | CG5430-PA | 22..205 | 18..201 | 377 | 36.4 | Plus |