Clone BS20927 Report

Search the DGRC for BS20927

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:209
Well:27
Vector:pDNR-Dual
Associated Gene/TranscriptCG31493-RA
Protein status:BS20927.pep: full length peptide match
Sequenced Size:773

Clone Sequence Records

BS20927.complete Sequence

773 bp assembled on 2011-01-18

GenBank Submission: KX803913

> BS20927.complete
GAAGTTATCAGTCGACATGAAGGACTGCGTCGAAATTTTCGAAGGGGAGT
TTGAGGTCCTTCGTGTAACTCCACCGCTTTATGATGAAGTTGAAGAGCTG
CTTGTGAACATTTCGATCAATTATGAGTTCGGATGTGTGATCGCTAAACT
TAAAGACTCTCCGTTGGCCATTGCCGAGCTAGGTAAACTAATAAGGCACA
TCATATCCCGAGGAATATCATTCGCTATACGACACGTGGAAAGTGGCAGA
ATTGTGGCTGCAATCGCTAATATAATATTTAATACAAAGAGGAAAACCTC
ATACTACGACATTTGCGCCCAGATCAAGAGTCCAAACATGATAAAGTACA
TGGAACTTTGGGATGCTGTCGATGCGAGCTTTAATGTCAACGAGCACTGC
CAGGTGGACAGCACGGGAGATGTGGAATACATGGCCACTTTGCCGGAGTT
CAGACGACGTGGCCTGGGCCACATCTTATGCCAGCAGTCCATCCAGTTCG
CAAGTCTCTTGGCCCAGCGGAAGCTTCCTCTTGAGATACTCAACCAGCTG
CCTGAGGAGATGCGGATTGAAAGACCGCAGGCCATTGTCGCAATAACTAC
ATCCCAATCCTCGCAAATAATGGGCAGACAATTGGGAATGAAAACTATGC
ATAAGTGGCATTTTTCCGAGCTGAGGTCCTTGTGCGGAGCGATGGCGGAG
TCCAATGGCGCAGCCCAGGCCTTTGAATATGCAGAACTGCAAGTAGTAAA
GTTTTGAAAGCTTTCTAGACCAT

BS20927.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:15:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG31493-RA 741 CG31493-PA 1..741 17..757 3705 100 Plus
CG31493-RB 657 CG31493-PB 181..657 281..757 2385 100 Plus
CG31493-RB 657 CG31493-PB 1..166 17..182 830 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:15:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG31493-RA 1005 CG31493-RA 116..856 17..757 3705 100 Plus
CG31493-RB 921 CG31493-RB 296..772 281..757 2385 100 Plus
CG31493-RB 921 CG31493-RB 116..281 17..182 830 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:15:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7132070..7132546 281..757 2385 100 Plus
3R 32079331 3R 7131824..7132008 96..280 925 100 Plus
3R 32079331 3R 7131675..7131755 17..97 405 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:15:36 has no hits.

BS20927.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:39:35 Download gff for BS20927.complete
Subject Subject Range Query Range Percent Splice Strand
CG31493-RA 116..855 17..756 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:51:54 Download gff for BS20927.complete
Subject Subject Range Query Range Percent Splice Strand
CG31493-RA 116..855 17..756 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:59:56 Download gff for BS20927.complete
Subject Subject Range Query Range Percent Splice Strand
CG31493-RA 116..855 17..756 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:59:56 Download gff for BS20927.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7131675..7131755 17..97 100 -> Plus
3R 7131826..7132008 98..280 100 -> Plus
3R 7132070..7132545 281..756 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:51:54 Download gff for BS20927.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2957397..2957477 17..97 100 -> Plus
arm_3R 2957548..2957730 98..280 100 -> Plus
arm_3R 2957792..2958267 281..756 100   Plus

BS20927.pep Sequence

Translation from 16 to 756

> BS20927.pep
MKDCVEIFEGEFEVLRVTPPLYDEVEELLVNISINYEFGCVIAKLKDSPL
AIAELGKLIRHIISRGISFAIRHVESGRIVAAIANIIFNTKRKTSYYDIC
AQIKSPNMIKYMELWDAVDASFNVNEHCQVDSTGDVEYMATLPEFRRRGL
GHILCQQSIQFASLLAQRKLPLEILNQLPEEMRIERPQAIVAITTSQSSQ
IMGRQLGMKTMHKWHFSELRSLCGAMAESNGAAQAFEYAELQVVKF*

BS20927.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:03:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG31493-PA 246 CG31493-PA 1..246 1..246 1255 100 Plus
CG31493-PB 218 CG31493-PB 1..218 1..246 1051 87 Plus
CG31248-PB 251 CG31248-PB 12..225 7..218 173 26.6 Plus
CG31248-PA 251 CG31248-PA 12..225 7..218 173 26.6 Plus