BS20936.complete Sequence
737 bp assembled on 2011-01-18
GenBank Submission: KX803806
> BS20936.complete
GAAGTTATCAGTCGACATGGCGGCGGAAAAGTGTGCAGAAGAGTTTGGGG
ACTCCTCCGCGGCGTCCTTGAAAATTGTACCAAAGGACTATGCATATCCA
CTTCTAGAGGATCCGCAAGGCGCGCTGACCACGCCCACTGAAGGCGGGCG
GACGCTAGTTACCCGCGGTGGCTTTAACTACTTCCACTACGGATGCGATG
GCCACCAGGATGCTGGCTGGGGTTGTGGCTACCGCACCCTGCAATCGGCC
ATTTCCTGGATCCAACGTCGACAGGGGTCGAGCGGTCATGTTCCTTCCAT
CCGGGAGATTCAGCAGATCCTGGTGGCCATCGGCGACAAGGGTCCAGAGT
TCGTGGGCTCGCGCGACTGGATCGGAACGCTCGAGGAGTTCTACGTGATC
GATGTGCTGCACCAGGTGCCGTGCAAGATTCTTCACGCCAAGGAGCTTAG
CTCGGACGAGATCCTCGGCGAGCTTCGGAGCTATTTTGAGAAGTACCAAG
GCTTCGTCGCCATGGGCGGTCTGAGTGACACCGCCTCCAAGGCTATTACC
GGCTACCATTGCAGTGCACGCGGTCGCATCTTCCTGCAGGTGGTGGATCC
GCATTTCGTAGGCGTGCCCAGCTCCCGGCAGCACTTAATCGATCTGGGCT
ACGTTCGTTGGGTGCCCGTTGACGAGTTCGCCGGCAGCACGTACAACCTC
TGCCTCATCTTGCAGCCGTAGAAGCTTTCTAGACCAT
BS20936.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:15:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30157-RB | 705 | CG30157-PB | 1..705 | 17..721 | 3525 | 100 | Plus |
| CG30157-RA | 705 | CG30157-PA | 1..705 | 17..721 | 3525 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:15:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30157-RB | 927 | CG30157-RB | 158..862 | 17..721 | 3525 | 100 | Plus |
| CG30157-RA | 1034 | CG30157-RA | 265..969 | 17..721 | 3525 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:15:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6974290..6974869 | 596..17 | 2900 | 100 | Minus |
| 2R | 25286936 | 2R | 6974103..6974229 | 721..595 | 635 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:15:22 has no hits.
BS20936.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:39:33 Download gff for
BS20936.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30157-RA | 265..969 | 17..721 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:51:48 Download gff for
BS20936.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30157-RA | 265..969 | 17..721 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:59:50 Download gff for
BS20936.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30157-RA | 265..969 | 17..721 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:59:50 Download gff for
BS20936.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6974103..6974228 | 596..721 | 100 | <- | Minus |
| 2R | 6974291..6974869 | 17..595 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:51:48 Download gff for
BS20936.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2861608..2861733 | 596..721 | 100 | <- | Minus |
| arm_2R | 2861796..2862374 | 17..595 | 100 | | Minus |
BS20936.pep Sequence
Translation from 16 to 720
> BS20936.pep
MAAEKCAEEFGDSSAASLKIVPKDYAYPLLEDPQGALTTPTEGGRTLVTR
GGFNYFHYGCDGHQDAGWGCGYRTLQSAISWIQRRQGSSGHVPSIREIQQ
ILVAIGDKGPEFVGSRDWIGTLEEFYVIDVLHQVPCKILHAKELSSDEIL
GELRSYFEKYQGFVAMGGLSDTASKAITGYHCSARGRIFLQVVDPHFVGV
PSSRQHLIDLGYVRWVPVDEFAGSTYNLCLILQP*
BS20936.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:03:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30157-PB | 234 | CG30157-PB | 1..234 | 1..234 | 1252 | 100 | Plus |
| CG30157-PA | 234 | CG30157-PA | 1..234 | 1..234 | 1252 | 100 | Plus |
| CG16979-PA | 607 | CG16979-PA | 398..604 | 28..234 | 264 | 33.5 | Plus |
