Clone BS20938 Report

Search the DGRC for BS20938

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:209
Well:38
Vector:pDNR-Dual
Associated Gene/TranscriptCG15912-RA
Protein status:BS20938.pep: gold
Sequenced Size:773

Clone Sequence Records

BS20938.complete Sequence

773 bp assembled on 2011-01-18

GenBank Submission: KX802464

> BS20938.complete
GAAGTTATCAGTCGACATGTCGTTGACTTCGCAATTTGTTGCGAATTTGA
AACGCTTTCGCCTGGTGACCTTCGATGTAACGGACACGCTGCTTCGCCTG
GAGGATCCCCTTCGCCAGTACCATCAGACGGCAGAGGAGTTCGGGGTCAC
CGGAGTGGATCGCCGCCGATTGGAACAATGCTTTCGCCAGCAATTCAAGG
CGATGAGCAGCGAACATCCAAACTTTGGCCGTTACTCGCCGGGATTGGAT
TGGCAGCGTTGGTGGCTTCAGCTGGTGGCTCGAACCTTTAGCTGCGTGGA
CCACGGTCTGGCGCCCGAGAAGCTGGAGAAGATCGGCCAGCGGCTAATTT
CCGTTTTTCGGACCAGCGCCTGTTGGAGTCACGTGAATGGTGCCCAGGAG
TTGGTGCAGAACGTCCGAAATGCCGGCAAATGTGTGGGCATCATCTCCAA
TTTCGATTCGTCACTGCCACAAGTCCTGGACGCCATGGGCTTTGCCGGCA
AATTCGATTTCATTCTGACTTCCTACGAAGCCGGTGTTATGAAGCCCGAA
CGCGGTATCTTCGAAATTCCGCTGCAGAGATTGCAAATTCCAGCGGAGCA
GGCCCTTCACATTGGCAACAAGTTGGATATGGACTATGAAGGTGCCCGGA
ATTGCGGCTGGAGCGGTTTGCTTGTGAGCAACGCTGACAATCCCCATTCT
TTTGCCAGTCTTTCCAGTCTGTTGGAGGCCTTAAAAACCCAACCAATCCG
ATGGTAAAAGCTTTCTAGACCAT

BS20938.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:10:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG15912-RA 741 CG15912-PA 1..741 17..757 3705 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:10:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG15912-RA 888 CG15912-RA 5..745 17..757 3705 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:10:43
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 4549074..4549814 17..757 3705 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:10:44 has no hits.

BS20938.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:38:58 Download gff for BS20938.complete
Subject Subject Range Query Range Percent Splice Strand
CG15912-RA 5..743 17..755 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:49:41 Download gff for BS20938.complete
Subject Subject Range Query Range Percent Splice Strand
CG15912-RA 5..743 17..755 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:57:59 Download gff for BS20938.complete
Subject Subject Range Query Range Percent Splice Strand
CG15912-RA 5..743 17..755 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:57:59 Download gff for BS20938.complete
Subject Subject Range Query Range Percent Splice Strand
X 4549074..4549812 17..755 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:49:41 Download gff for BS20938.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 4443107..4443845 17..755 100   Plus

BS20938.pep Sequence

Translation from 16 to 756

> BS20938.pep
MSLTSQFVANLKRFRLVTFDVTDTLLRLEDPLRQYHQTAEEFGVTGVDRR
RLEQCFRQQFKAMSSEHPNFGRYSPGLDWQRWWLQLVARTFSCVDHGLAP
EKLEKIGQRLISVFRTSACWSHVNGAQELVQNVRNAGKCVGIISNFDSSL
PQVLDAMGFAGKFDFILTSYEAGVMKPERGIFEIPLQRLQIPAEQALHIG
NKLDMDYEGARNCGWSGLLVSNADNPHSFASLSSLLEALKTQPIRW*

BS20938.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:01:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG15912-PA 246 CG15912-PA 1..246 1..246 1297 100 Plus
Reg-2-PA 260 CG3200-PA 3..260 10..246 366 34 Plus