Clone BS20940 Report

Search the DGRC for BS20940

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:209
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptCG31882-RA
Protein status:BS20940.pep: gold
Sequenced Size:398

Clone Sequence Records

BS20940.complete Sequence

398 bp assembled on 2011-01-18

GenBank Submission: KX800926

> BS20940.complete
GAAGTTATCAGTCGACATGTTAAATTTAGGTAACATTAAAAATCGATCCA
AATTCTATGATCAACAGGATGAAAACAGACTCCAAAAGCGGCGCAAGAAG
GGTGCTGCCCAATTGGATGCAAAACCATTCCCGGACGAGCCCGTAACGTC
GAGTGAGGAAAGTCTATATCCTCGGGTTAGCCGTATGCTACGTCGGATGA
GCTCTTCGCTCTGGTCACGACTTTGGGGTCTATCCAATCAATCCACTGAC
TCTGCCCGCCTGAAGACACATCCGAACGAGCTAGGCAACCAGTACCCGCC
GAGGACGGATTCGGGGCAGATCCCTCTGTGGCAGGCCAGCCCGACAGCTT
ATTTGGGATATCGTTTCCGATTGGGCAGATAGAAGCTTTCTAGACCAT

BS20940.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:10:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG31882-RA 366 CG31882-PA 1..366 17..382 1830 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:10:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG31882-RA 834 CG31882-RA 63..429 17..383 1835 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:10:53
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9624857..9625223 383..17 1835 100 Minus
Blast to na_te.dros performed on 2014-11-26 16:10:54 has no hits.

BS20940.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:38:59 Download gff for BS20940.complete
Subject Subject Range Query Range Percent Splice Strand
CG31882-RA 68..428 22..382 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:49:45 Download gff for BS20940.complete
Subject Subject Range Query Range Percent Splice Strand
CG31882-RA 68..428 22..382 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:58:04 Download gff for BS20940.complete
Subject Subject Range Query Range Percent Splice Strand
CG31882-RA 68..428 22..382 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:58:04 Download gff for BS20940.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9624858..9625218 22..382 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:49:45 Download gff for BS20940.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9624858..9625218 22..382 100   Minus

BS20940.pep Sequence

Translation from 16 to 381

> BS20940.pep
MLNLGNIKNRSKFYDQQDENRLQKRRKKGAAQLDAKPFPDEPVTSSEESL
YPRVSRMLRRMSSSLWSRLWGLSNQSTDSARLKTHPNELGNQYPPRTDSG
QIPLWQASPTAYLGYRFRLGR*

BS20940.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:01:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG31882-PA 121 CG31882-PA 1..121 1..121 639 100 Plus