BS20942.complete Sequence
966 bp assembled on 2011-01-18
GenBank Submission: KX802078
> BS20942.complete
GAAGTTATCAGTCGACATGTTTCCCGGCGTCCCAGTTTTTTCCGTTTGCA
TTGCACTTAGTGTGATGATTTTTTGTCATGCGGAGACGCTGAATTTGTTT
GGAAACTTGGAGGCTATTTATGAACAGGCAGAAAATGCACTCTCAACTTT
ACAAGAATCACTTTTGCAACTTGAAACCAATGGCACTCTAAACACATCCC
CTGATGTGATTTATCCAACTTCCTGTCTGACTTCTGGGGATCTTGAAAAT
GGCTTGCACACCCTGAAAGTTCCAGGCTTGAGTCCCTTTCAAGTGTATTG
CGAAAATCAGTTGGCTGGACCCGGTTGGATTGTAATTCAAAAGAGGTTCA
GTGGAAATCTGAGCTTCTTTCGCAATTGGAAGGAGTACAAGAACGGATTC
GGCAATCTAATGGACGAGTACTTCCTCGGCCTCGAAAAGATTCGTGCCTT
GACTGCCCTGGAGCCGCATGAGTTGTATGTACACCTGGAGGATTTCGATG
ATACAATTAAGCATGCGAAATTCGATGAATTTGCCATTGGAAACGAAGAT
GACGACTACGCCATGAATACACTGGGAAAATATTCGGGCACTGCGGGAGA
TTCCCTCCGCTCACACCGCAAAATGAAGTTCTCCACATATGATCGGGATA
ACGATCATGAGTTTAATAAGAACTGTGCATTTTACTATCTGGGAGGATGG
TGGTACAACGCATGTCTGGACAGCAACCTTAATGGTCAGTATATGCCGGG
TGGGAAATACGAGGAGAGCTTGTTCGCCAGAGGAATGTGCTGGCGATCTT
GGCGTGGCCACAACTACGGATACAGGGTAACCCAAATGATGATAAGACCC
AAGTGCCGAATGATACCAGTGACTCAGCGGTGAAAGCTTTCTAGACCATT
CGTGTGGCGCGCGGGCGCGAGGTAAGTGGTCAATAATCTATAATCTATAA
ATCTATTAAATTCCAA
BS20942.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:11:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30280-RB | 819 | CG30280-PB | 1..819 | 65..883 | 4095 | 100 | Plus |
| CG30280-RC | 663 | CG30280-PC | 1..659 | 65..723 | 3295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:11:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30280-RB | 1075 | CG30280-RB | 8..876 | 16..884 | 4345 | 100 | Plus |
| CG30280-RC | 750 | CG30280-RC | 8..715 | 16..723 | 3540 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:10:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22113844..22114419 | 148..723 | 2880 | 100 | Plus |
| 2R | 25286936 | 2R | 22114480..22114642 | 722..884 | 815 | 100 | Plus |
| 2R | 25286936 | 2R | 22113596..22113665 | 16..85 | 350 | 100 | Plus |
| 2R | 25286936 | 2R | 22113729..22113792 | 84..147 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:11:00 has no hits.
BS20942.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:39:00 Download gff for
BS20942.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30280-RB | 15..879 | 23..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:49:47 Download gff for
BS20942.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30280-RB | 15..879 | 23..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:58:05 Download gff for
BS20942.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30280-RB | 15..879 | 23..890 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:58:05 Download gff for
BS20942.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22113603..22113665 | 23..85 | 100 | -> | Plus |
| 2R | 22113731..22113792 | 86..147 | 100 | -> | Plus |
| 2R | 22113844..22114419 | 148..723 | 100 | -> | Plus |
| 2R | 22114482..22114645 | 724..890 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:49:47 Download gff for
BS20942.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18001108..18001170 | 23..85 | 100 | -> | Plus |
| arm_2R | 18001236..18001297 | 86..147 | 100 | -> | Plus |
| arm_2R | 18001349..18001924 | 148..723 | 100 | -> | Plus |
| arm_2R | 18001987..18002150 | 724..890 | 98 | | Plus |
BS20942.pep Sequence
Translation from 16 to 882
> BS20942.pep
MFPGVPVFSVCIALSVMIFCHAETLNLFGNLEAIYEQAENALSTLQESLL
QLETNGTLNTSPDVIYPTSCLTSGDLENGLHTLKVPGLSPFQVYCENQLA
GPGWIVIQKRFSGNLSFFRNWKEYKNGFGNLMDEYFLGLEKIRALTALEP
HELYVHLEDFDDTIKHAKFDEFAIGNEDDDYAMNTLGKYSGTAGDSLRSH
RKMKFSTYDRDNDHEFNKNCAFYYLGGWWYNACLDSNLNGQYMPGGKYEE
SLFARGMCWRSWRGHNYGYRVTQMMIRPKCRMIPVTQR*
BS20942.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:01:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30280-PB | 272 | CG30280-PB | 1..272 | 17..288 | 1496 | 100 | Plus |
| CG30280-PC | 220 | CG30280-PC | 1..219 | 17..235 | 1194 | 100 | Plus |
| CG30281-PA | 291 | CG30281-PA | 25..275 | 31..280 | 704 | 49.6 | Plus |
| CG9500-PA | 272 | CG9500-PA | 17..268 | 23..280 | 584 | 44.7 | Plus |
| CG5550-PA | 246 | CG5550-PA | 35..246 | 66..279 | 516 | 42.5 | Plus |
