BS20944.complete Sequence
605 bp assembled on 2011-01-18
GenBank Submission: KX805560
> BS20944.complete
GAAGTTATCAGTCGACATGGAATACAGCGGAGTGCGGTTACCCGGAATTT
TTTGTCCGGATGAAAGCATTGAGCAGTTTGCAAGACTTTACGGAAGTGAT
AATTTTAGCAAAATGATGATAATAGCCACGACCAGTAGTCCTCCGAGGAC
TATGCAGGCCACAACTCATTCACCTCCAGGAATGATGGGGGGGAATCCGT
CCAGGTTTCAAGGGAATGCATCAACAGCTCACGATCGAAATCTAAAAGTT
AATCACCGATATGCTCATAATGTGCAGGCCCCATCCAATCCGCACCCGGT
CATAATGGGTCCGTCCAGGTTTCATGGAAATCTACCACCTATTCAGGATA
CATATTTAAAAAGTAGTCCCCGAGATCAAGGATTTCATGCTTATGGGGCC
GTGCATAGAGGCTGTGGTGACCACTATAGTTATTCGGCAAATTTGCAGAA
CTCTAAACCTGAATATCCTACAAGGCCCGACCAATCGGGCACACAAAATC
CGGGACAAATGTACTGCAATACTCAGCACTATCAGAATCTGAATTTTTAT
CATCCACCTCCACCTGGACCCAGATTTCCCTGGCTTTAGAAGCTTTCTAG
ACCAT
BS20944.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:11:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31206-RA | 573 | CG31206-PA | 1..573 | 17..589 | 2865 | 100 | Plus |
CG31206-RB | 597 | CG31206-PB | 276..597 | 268..589 | 1610 | 100 | Plus |
CG31206-RB | 597 | CG31206-PB | 1..252 | 17..268 | 1260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:11:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31206-RA | 832 | CG31206-RA | 79..654 | 15..590 | 2880 | 100 | Plus |
CG31206-RB | 856 | CG31206-RB | 356..678 | 268..590 | 1615 | 100 | Plus |
CG31206-RB | 856 | CG31206-RB | 79..332 | 15..268 | 1270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:11:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20107114..20107332 | 590..372 | 1095 | 100 | Minus |
3R | 32079331 | 3R | 20107573..20107778 | 267..62 | 1030 | 100 | Minus |
3R | 32079331 | 3R | 20107396..20107500 | 372..268 | 525 | 100 | Minus |
3R | 32079331 | 3R | 20107834..20107885 | 66..15 | 245 | 98.1 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:11:05 has no hits.
BS20944.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:39:00 Download gff for
BS20944.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31206-RA | 119..691 | 17..589 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:49:50 Download gff for
BS20944.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31206-RA | 81..653 | 17..589 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:58:07 Download gff for
BS20944.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31206-RA | 81..653 | 17..589 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:58:07 Download gff for
BS20944.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20107115..20107331 | 373..589 | 100 | <- | Minus |
3R | 20107396..20107500 | 268..372 | 100 | <- | Minus |
3R | 20107573..20107778 | 62..267 | 100 | <- | Minus |
3R | 20107839..20107883 | 17..61 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:49:50 Download gff for
BS20944.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15932837..15933053 | 373..589 | 100 | <- | Minus |
arm_3R | 15933118..15933222 | 268..372 | 100 | <- | Minus |
arm_3R | 15933295..15933500 | 62..267 | 100 | <- | Minus |
arm_3R | 15933561..15933605 | 17..61 | 100 | | Minus |
BS20944.pep Sequence
Translation from 16 to 588
> BS20944.pep
MEYSGVRLPGIFCPDESIEQFARLYGSDNFSKMMIIATTSSPPRTMQATT
HSPPGMMGGNPSRFQGNASTAHDRNLKVNHRYAHNVQAPSNPHPVIMGPS
RFHGNLPPIQDTYLKSSPRDQGFHAYGAVHRGCGDHYSYSANLQNSKPEY
PTRPDQSGTQNPGQMYCNTQHYQNLNFYHPPPPGPRFPWL*
BS20944.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:01:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31206-PA | 190 | CG31206-PA | 1..190 | 1..190 | 1070 | 100 | Plus |
CG31206-PB | 198 | CG31206-PB | 1..198 | 1..190 | 1051 | 96 | Plus |