Clone BS20944 Report

Search the DGRC for BS20944

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:209
Well:44
Vector:pDNR-Dual
Associated Gene/TranscriptCG31206-RA
Protein status:BS20944.pep: full length peptide match
Sequenced Size:605

Clone Sequence Records

BS20944.complete Sequence

605 bp assembled on 2011-01-18

GenBank Submission: KX805560

> BS20944.complete
GAAGTTATCAGTCGACATGGAATACAGCGGAGTGCGGTTACCCGGAATTT
TTTGTCCGGATGAAAGCATTGAGCAGTTTGCAAGACTTTACGGAAGTGAT
AATTTTAGCAAAATGATGATAATAGCCACGACCAGTAGTCCTCCGAGGAC
TATGCAGGCCACAACTCATTCACCTCCAGGAATGATGGGGGGGAATCCGT
CCAGGTTTCAAGGGAATGCATCAACAGCTCACGATCGAAATCTAAAAGTT
AATCACCGATATGCTCATAATGTGCAGGCCCCATCCAATCCGCACCCGGT
CATAATGGGTCCGTCCAGGTTTCATGGAAATCTACCACCTATTCAGGATA
CATATTTAAAAAGTAGTCCCCGAGATCAAGGATTTCATGCTTATGGGGCC
GTGCATAGAGGCTGTGGTGACCACTATAGTTATTCGGCAAATTTGCAGAA
CTCTAAACCTGAATATCCTACAAGGCCCGACCAATCGGGCACACAAAATC
CGGGACAAATGTACTGCAATACTCAGCACTATCAGAATCTGAATTTTTAT
CATCCACCTCCACCTGGACCCAGATTTCCCTGGCTTTAGAAGCTTTCTAG
ACCAT

BS20944.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:11:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG31206-RA 573 CG31206-PA 1..573 17..589 2865 100 Plus
CG31206-RB 597 CG31206-PB 276..597 268..589 1610 100 Plus
CG31206-RB 597 CG31206-PB 1..252 17..268 1260 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:11:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG31206-RA 832 CG31206-RA 79..654 15..590 2880 100 Plus
CG31206-RB 856 CG31206-RB 356..678 268..590 1615 100 Plus
CG31206-RB 856 CG31206-RB 79..332 15..268 1270 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:11:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20107114..20107332 590..372 1095 100 Minus
3R 32079331 3R 20107573..20107778 267..62 1030 100 Minus
3R 32079331 3R 20107396..20107500 372..268 525 100 Minus
3R 32079331 3R 20107834..20107885 66..15 245 98.1 Minus
Blast to na_te.dros performed on 2014-11-26 16:11:05 has no hits.

BS20944.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:39:00 Download gff for BS20944.complete
Subject Subject Range Query Range Percent Splice Strand
CG31206-RA 119..691 17..589 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:49:50 Download gff for BS20944.complete
Subject Subject Range Query Range Percent Splice Strand
CG31206-RA 81..653 17..589 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:58:07 Download gff for BS20944.complete
Subject Subject Range Query Range Percent Splice Strand
CG31206-RA 81..653 17..589 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:58:07 Download gff for BS20944.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20107115..20107331 373..589 100 <- Minus
3R 20107396..20107500 268..372 100 <- Minus
3R 20107573..20107778 62..267 100 <- Minus
3R 20107839..20107883 17..61 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:49:50 Download gff for BS20944.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15932837..15933053 373..589 100 <- Minus
arm_3R 15933118..15933222 268..372 100 <- Minus
arm_3R 15933295..15933500 62..267 100 <- Minus
arm_3R 15933561..15933605 17..61 100   Minus

BS20944.pep Sequence

Translation from 16 to 588

> BS20944.pep
MEYSGVRLPGIFCPDESIEQFARLYGSDNFSKMMIIATTSSPPRTMQATT
HSPPGMMGGNPSRFQGNASTAHDRNLKVNHRYAHNVQAPSNPHPVIMGPS
RFHGNLPPIQDTYLKSSPRDQGFHAYGAVHRGCGDHYSYSANLQNSKPEY
PTRPDQSGTQNPGQMYCNTQHYQNLNFYHPPPPGPRFPWL*

BS20944.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:01:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG31206-PA 190 CG31206-PA 1..190 1..190 1070 100 Plus
CG31206-PB 198 CG31206-PB 1..198 1..190 1051 96 Plus