BS20945.complete Sequence
854 bp assembled on 2011-01-18
GenBank Submission: KX805768
> BS20945.complete
GAAGTTATCAGTCGACATGTCGGCAGTGGTTTTACTTATTTTGTTGGGTC
TTTCGGGACTCGTATCCATAACAGCCATACGAATCAAGGGAAACTCAACG
GATGGTCGGTTTTACAAGGATCAACGGATCATCGGTGGTCAGGCAGCTGA
GGATGGCTTCGCTCCCTATCAGATATCCTTGCAGGGAATCTCCGGTGCCC
ACTCCTGTGGTGGTGCCATAATAAACGAGACCTTCGTCCTGACAGCCGCT
CACTGTGTCGAAAATGCCTTTATTCCATGGCTGGTTGTCGTCACGGGCAC
TAATAAGTATAACCAACCAGGAGGCAGGTATTTCCTAAAAGCCATTCATA
TCCATTGTAACTACGATAATCCGGAGATGCACAATGATATTGCCCTGTTG
GAATTAGTTGAGCCAATTGCTTGGGACGAGCGCACTCAGCCGATCCCGTT
GCCCTTGGTGCCCATGCAGCCGGGTGATGAAGTAATCCTCACTGGTTGGG
GATCCACGGTCCTCTGGGGCACCAGTCCCATCGATTTGCAGGTTCTATAC
CTTCAGTACGTTCCCCATCGCGAGTGCAAAGCCCTGCTGAGCAACGATGA
AGATTGTGATGTGGGTCACATTTGCACTTTTTCGCGGCTGGGAGAAGGTG
CCTGCCATGGAGATTCCGGTGGACCTCTGGTCAGCAATGGTTACCTGGTG
GGACTGGTCAACTGGGGATGGCCCTGCGCAACAGGAGTTCCGGACGTTCA
TGCCAGTGTTTATTTCTATCGTGATTGGATACGCAATGTCATGAGTGGGA
ATTCAAAGTGCACTGGGTTCAGCTCCAACCAATCCTAAAAGCTTTCTAGA
CCAT
BS20945.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:11:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31269-RB | 822 | CG31269-PB | 1..822 | 17..838 | 4110 | 100 | Plus |
| CG31265-RA | 801 | CG31265-PA | 591..709 | 610..728 | 235 | 79.8 | Plus |
| CG5255-RA | 822 | CG5255-PA | 622..684 | 656..718 | 180 | 85.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:11:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31269-RB | 937 | CG31269-RB | 6..828 | 17..839 | 4115 | 100 | Plus |
| CG31265-RA | 909 | CG31265-RA | 625..743 | 610..728 | 235 | 79.8 | Plus |
| CG5255-RA | 914 | CG5255-RA | 640..702 | 656..718 | 180 | 85.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:11:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17127131..17127857 | 17..743 | 3635 | 100 | Plus |
| 3R | 32079331 | 3R | 17127991..17128092 | 738..839 | 495 | 99 | Plus |
| 3R | 32079331 | 3R | 17128836..17128954 | 610..728 | 235 | 79.8 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:11:10 has no hits.
BS20945.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:39:01 Download gff for
BS20945.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31269-RB | 6..825 | 17..836 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:49:52 Download gff for
BS20945.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31269-RB | 6..825 | 17..836 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:58:09 Download gff for
BS20945.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31269-RB | 6..825 | 17..836 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:58:09 Download gff for
BS20945.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17127131..17127856 | 17..742 | 100 | -> | Plus |
| 3R | 17127996..17128089 | 743..836 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:49:52 Download gff for
BS20945.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12952853..12953578 | 17..742 | 100 | -> | Plus |
| arm_3R | 12953718..12953811 | 743..836 | 100 | | Plus |
BS20945.pep Sequence
Translation from 16 to 837
> BS20945.pep
MSAVVLLILLGLSGLVSITAIRIKGNSTDGRFYKDQRIIGGQAAEDGFAP
YQISLQGISGAHSCGGAIINETFVLTAAHCVENAFIPWLVVVTGTNKYNQ
PGGRYFLKAIHIHCNYDNPEMHNDIALLELVEPIAWDERTQPIPLPLVPM
QPGDEVILTGWGSTVLWGTSPIDLQVLYLQYVPHRECKALLSNDEDCDVG
HICTFSRLGEGACHGDSGGPLVSNGYLVGLVNWGWPCATGVPDVHASVYF
YRDWIRNVMSGNSKCTGFSSNQS*
BS20945.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:02:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31269-PB | 273 | CG31269-PB | 1..273 | 1..273 | 1482 | 100 | Plus |
| CG31265-PA | 266 | CG31265-PA | 8..264 | 6..265 | 763 | 57.9 | Plus |
| CG17475-PB | 288 | CG17475-PB | 9..284 | 5..271 | 673 | 48.2 | Plus |
| CG17475-PA | 288 | CG17475-PA | 9..284 | 5..271 | 673 | 48.2 | Plus |
| CG5255-PA | 273 | CG5255-PA | 1..254 | 5..260 | 607 | 50 | Plus |
