BS20946.complete Sequence
620 bp assembled on 2011-01-18
GenBank Submission: KX803666
> BS20946.complete
GAAGTTATCAGTCGACATGAATTTAAAACTTCACCATTTTACTACTATGG
CCACTACTTTCTTTTATTTCGGTTTCGGTAGCAATATGCTAGCCAGTCGG
ATTCATATACAAAATCCAACTGCAAAGAGGATTGGTGTCGGTAAATTAGA
GAACTTTCGGTTAGACTTTCACACTGGATCGAAAAATTGGCTAGGCGCTC
CCGCTACAATTGTACCCACTCAAGGATCACATGTGTACGGAGCCATTTGG
GAGATTGATATGTGCAACCTAAAGGATTTGGATGATCAGGAGAGTGTGCC
CGCTGGCGTATATGTTCCGATTAGTGTTCCCGTTCACCTGTTGAACACTG
ATTCAAGCATTACCTGTCGTGCATATCACTTGACAAATCAGCCTCAAACA
GACCTCCATGCTGGAGGTGGCCAGGAAATTATTCCACACGATCGACAGCC
TTCGCAAACGTACCTTAAAGTTTTGGTGAAAGGAGCTACGGAATCCGGAG
TCCCGGATGAATACATCGAATGGCTGAGAGGGATCAAGCACAATGGCAAA
CAAGTGCCAGCCATGGAGGCAAAACTTGAATTGGATAAAGTGCAACTTAG
TTGAAAGCTTTCTAGACCAT
BS20946.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:10:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32196-RB | 588 | CG32196-PB | 1..588 | 17..604 | 2940 | 100 | Plus |
| CG32196-RC | 465 | CG32196-PC | 13..465 | 152..604 | 2265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:10:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32196-RB | 826 | CG32196-RB | 144..732 | 16..604 | 2945 | 100 | Plus |
| CG32196-RC | 703 | CG32196-RC | 157..609 | 152..604 | 2265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:10:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18459558..18459876 | 604..286 | 1595 | 100 | Minus |
| 3L | 28110227 | 3L | 18459936..18460071 | 285..150 | 680 | 100 | Minus |
| 3L | 28110227 | 3L | 18460224..18460346 | 151..29 | 615 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:10:30 has no hits.
BS20946.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:38:56 Download gff for
BS20946.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32196-RB | 145..731 | 17..603 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:49:34 Download gff for
BS20946.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32196-RB | 145..731 | 17..603 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:57:53 Download gff for
BS20946.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32196-RB | 145..731 | 17..603 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:57:53 Download gff for
BS20946.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18459559..18459876 | 286..603 | 100 | <- | Minus |
| 3L | 18459936..18460069 | 152..285 | 100 | <- | Minus |
| 3L | 18460224..18460346 | 29..151 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:49:34 Download gff for
BS20946.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18452659..18452976 | 286..603 | 100 | <- | Minus |
| arm_3L | 18453036..18453169 | 152..285 | 100 | <- | Minus |
| arm_3L | 18453324..18453446 | 29..151 | 100 | <- | Minus |
BS20946.pep Sequence
Translation from 16 to 603
> BS20946.pep
MNLKLHHFTTMATTFFYFGFGSNMLASRIHIQNPTAKRIGVGKLENFRLD
FHTGSKNWLGAPATIVPTQGSHVYGAIWEIDMCNLKDLDDQESVPAGVYV
PISVPVHLLNTDSSITCRAYHLTNQPQTDLHAGGGQEIIPHDRQPSQTYL
KVLVKGATESGVPDEYIEWLRGIKHNGKQVPAMEAKLELDKVQLS*
BS20946.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:01:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32196-PB | 195 | CG32196-PB | 1..195 | 1..195 | 1041 | 100 | Plus |
| CG32196-PC | 154 | CG32196-PC | 3..154 | 44..195 | 809 | 99.3 | Plus |
| CG4306-PA | 220 | CG4306-PA | 42..220 | 15..194 | 479 | 54.4 | Plus |
