BS20951.complete Sequence
713 bp assembled on 2011-01-18
GenBank Submission: KX803166
> BS20951.complete
GAAGTTATCAGTCGACATGTTTCTGGACGCCATCTTCTTTATACCGACCC
TGTTCACTTACCTGCTTATCGGACTGCTCATCGTCATCCTGTGCTTCGTG
GTGGTCTATATCAGCCACAAGATCTATGTCTCCGTCTACGACAACCTGCC
TCTGGCCGCCTTGCCCGGCAACTCACGGCAACAGCTCCTGGGACTGCGTC
ACTCCAATCATGCGATGACCATACGGGAATACCTGGACAGCTCGCTCCGC
AGCCCACGTTCCAATCAGCCGAGCTTACGGTCAGTTTGGATTCAGAACCG
GTCACAGATCCTGGAGACCTCTTCGGTGATGCGTATAGTGCTCTCCCTGG
AGCCCTGCTACCTGGTCAGCGCCGAGTTCGATGTTAGTTCCAGCCGGAAG
GCCATCAGTTTCTTGTGCAACTGCCGGGATCAGCCCGTGTGTGCTGCCTC
TGAACCGAGGCCTTCTGGGTCCTTGCATATAGTGCGGTTCTATGACCACC
TCTCCAAGATCCCGCGCCTCAAAGTCATGCTCAAGTGTAACCAAAGGCGG
CCGGACCCGAGGCCGGACAGTCGTATCCAGTTGACCCTCGACGACGTGAT
CCAGGAGGCCAGAGATAACCAGGATGCCAGGTGTACGGATAACGCCGCCG
CCTGCCGACCTGGTTCCTCAAGGCGGAACTCCCGGATACCGGATTAAAAG
CTTTCTAGACCAT
BS20951.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:11:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3288-RB | 681 | CG3288-PB | 1..681 | 17..697 | 3390 | 99.9 | Plus |
| CG3288-RA | 681 | CG3288-PA | 1..681 | 17..697 | 3390 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:11:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3288-RB | 908 | CG3288-RB | 29..711 | 16..698 | 3400 | 99.9 | Plus |
| CG3288-RA | 790 | CG3288-RA | 29..711 | 16..698 | 3400 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:11:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20836584..20836956 | 326..698 | 1865 | 100 | Plus |
| 3L | 28110227 | 3L | 20836210..20836520 | 16..326 | 1540 | 99.7 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:11:31 has no hits.
BS20951.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:39:03 Download gff for
BS20951.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3288-RA | 36..708 | 23..695 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:49:59 Download gff for
BS20951.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3288-RA | 36..708 | 23..695 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:58:16 Download gff for
BS20951.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3288-RA | 36..708 | 23..695 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:58:16 Download gff for
BS20951.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20836585..20836953 | 327..695 | 100 | | Plus |
| 3L | 20836217..20836520 | 23..326 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:49:59 Download gff for
BS20951.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20829317..20829620 | 23..326 | 99 | -> | Plus |
| arm_3L | 20829685..20830053 | 327..695 | 100 | | Plus |
BS20951.pep Sequence
Translation from 16 to 696
> BS20951.pep
MFLDAIFFIPTLFTYLLIGLLIVILCFVVVYISHKIYVSVYDNLPLAALP
GNSRQQLLGLRHSNHAMTIREYLDSSLRSPRSNQPSLRSVWIQNRSQILE
TSSVMRIVLSLEPCYLVSAEFDVSSSRKAISFLCNCRDQPVCAASEPRPS
GSLHIVRFYDHLSKIPRLKVMLKCNQRRPDPRPDSRIQLTLDDVIQEARD
NQDARCTDNAAACRPGSSRRNSRIPD*
BS20951.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:02:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3288-PB | 226 | CG3288-PB | 1..226 | 1..226 | 1165 | 100 | Plus |
| CG3288-PA | 226 | CG3288-PA | 1..226 | 1..226 | 1165 | 100 | Plus |
