Clone BS20953 Report

Search the DGRC for BS20953

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:209
Well:53
Vector:pDNR-Dual
Associated Gene/TranscriptCG5388-RA
Protein status:BS20953.pep: full length peptide match
Sequenced Size:530

Clone Sequence Records

BS20953.complete Sequence

530 bp assembled on 2011-01-18

GenBank Submission: KX803953

> BS20953.complete
GAAGTTATCAGTCGACATGCCTCCTGTTGAAGTGAGCATACGCCAAGGAG
TTGCGTTTTTGGGCTTGTATGTGCTGCTCCTGGCTGCTTTGGTGCGTCCC
CAGATGAACTTCAGCATATTCGTGGACTCGTTCTTCCTGCAGGTCAATCA
CTCGGTGGTAATGGTGCTGAGCTACCGGTTTGATTCCTATATGGCGATGG
CCGCCGCACCACTCAGTGCCGTTACGGTGTTTGCCCTTTCCAAGTGGAAC
GAACGTTGCGAGAATCCCTCCTCCAGGAAGCTAGTGATCATGGGCGTGAC
ATGCTTGTATGTCTTGGTGCTGGTGGCCAATGTCCTGGCCAATGGAATAG
TGGTTCAGCAGGCGTTGATCCGCTTCGATCAATGTCCGTATCGGGCGTGG
TATATGTACAGCCAGATGGCCATGTCCTTTATCAAATCCTCGATTGCAGA
AGTCCAGGAAGTTTTCACCGGACGGCCTCAACGTCGGTCCCGACTTATAT
ATCGTTTGCATTAGAAGCTTTCTAGACCAT

BS20953.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:11:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG5388-RB 498 CG5388-PB 1..498 17..514 2490 100 Plus
CG5388-RA 498 CG5388-PA 1..498 17..514 2490 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:11:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG5388-RB 1324 CG5388-RB 155..653 17..515 2495 100 Plus
CG5388-RA 741 CG5388-RA 155..652 17..514 2490 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:11:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22337122..22337619 514..17 2490 100 Minus
Blast to na_te.dros performed on 2014-11-26 16:11:35 has no hits.

BS20953.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:39:04 Download gff for BS20953.complete
Subject Subject Range Query Range Percent Splice Strand
CG5388-RA 155..652 17..514 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:50:02 Download gff for BS20953.complete
Subject Subject Range Query Range Percent Splice Strand
CG5388-RA 155..652 17..514 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:58:18 Download gff for BS20953.complete
Subject Subject Range Query Range Percent Splice Strand
CG5388-RB 155..652 17..514 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:58:18 Download gff for BS20953.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22337122..22337619 17..514 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:50:02 Download gff for BS20953.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18162844..18163341 17..514 100   Minus

BS20953.pep Sequence

Translation from 16 to 513

> BS20953.pep
MPPVEVSIRQGVAFLGLYVLLLAALVRPQMNFSIFVDSFFLQVNHSVVMV
LSYRFDSYMAMAAAPLSAVTVFALSKWNERCENPSSRKLVIMGVTCLYVL
VLVANVLANGIVVQQALIRFDQCPYRAWYMYSQMAMSFIKSSIAEVQEVF
TGRPQRRSRLIYRLH*

BS20953.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:02:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG5388-PB 165 CG5388-PB 1..165 1..165 831 100 Plus
CG5388-PA 165 CG5388-PA 1..165 1..165 831 100 Plus