BS20956.complete Sequence
821 bp assembled on 2011-01-18
GenBank Submission: KX804240
> BS20956.complete
GAAGTTATCAGTCGACATGGCATCACTTGGCATCTCATTTCATCCATTTC
CGGATCAGCCGGATGAACGGACACGCAACTGGCCACTGGTGGATTCATTT
TGGACTGTGCCCGTCCTGCTTTCCATTTATTTACTTATGGTGCGCTATGC
GCCCAAGTGGACAACCAGACACAAGCCGCTGCAGCTGAGAGCTCCATTGT
TCTGTCACAGCTTGGCCATGGTGTTCCTAAATGGATATATCTGCCTGGAA
CTCTATGCGGCAACCAGGGATCTTGACTACAATTTCGGATGTCAGCCATG
TCGGGTTAGCTTTGATCCACACGAAATGCGTCTTACAAAGGCATTTTGGT
GGTTTTACATTTCGAAAATCCTGGAATTCGCCGACACGGCTTTCTTCATC
CTGCGCCAAAAGTGGTCCCAGCTGAGCTTCCTTCATGTGTATCATCATAG
CACCATGTTCGTCTTTTGTTGGATTTTAATTAAGTGGATGCCAACGGGTT
CGACCTATGTGCCGGCCATGATAAACTCCTTCGTGCACATCATCATGTAT
GGCTATTATGCCCTGAGTGTGCTGGGTCCTCGAGTCCAGCGGTTCCTCTG
GTGGAAGCGCTACTTAACTGGCCTGCAGCTGGTCCAGTTTACCATTATCT
TCTTTTGGGCGTCACAGATGTTAGTCCGTGGATGCGAGTACGGCACCTGG
ATAACCCTATCGATGGCCATATATTCCCTGCCTTTCCTCTTTATGTTCGG
GAAATTCTATATGCAAAAGTACACGGTATCAGCAGTCGGCAAGAAACCTA
TATAAAAGCTTTCTAGACCAT
BS20956.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:15:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Elo68alpha-RA | 789 | CG32072-PA | 1..789 | 17..805 | 3945 | 100 | Plus |
| Elo68beta-RB | 810 | CG11801-PB | 121..671 | 116..666 | 1255 | 81.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:15:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Elo68alpha-RA | 937 | CG32072-RA | 25..814 | 17..806 | 3950 | 100 | Plus |
| Elo68beta-RB | 840 | CG11801-RB | 144..694 | 116..666 | 1255 | 81.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:15:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11101998..11102300 | 806..504 | 1515 | 100 | Minus |
| 3L | 28110227 | 3L | 11102366..11102537 | 503..332 | 860 | 100 | Minus |
| 3L | 28110227 | 3L | 11102621..11102786 | 331..166 | 830 | 100 | Minus |
| 3L | 28110227 | 3L | 11102855..11103006 | 168..17 | 760 | 100 | Minus |
| 3L | 28110227 | 3L | 11100821..11100970 | 666..517 | 570 | 92 | Minus |
| 3L | 28110227 | 3L | 11101047..11101201 | 501..347 | 385 | 83.2 | Minus |
| 3L | 28110227 | 3L | 11101277..11101432 | 327..172 | 240 | 76.9 | Minus |
| 3L | 28110227 | 3L | 11101503..11101555 | 168..116 | 190 | 90.6 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:15:44 has no hits.
BS20956.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:39:36 Download gff for
BS20956.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Elo68alpha-RA | 18..804 | 17..803 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:51:57 Download gff for
BS20956.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Elo68alpha-RA | 25..811 | 17..803 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:00:00 Download gff for
BS20956.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Elo68alpha-RA | 25..811 | 17..803 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:00:00 Download gff for
BS20956.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11102621..11102783 | 169..331 | 100 | <- | Minus |
| 3L | 11102855..11103006 | 17..168 | 100 | | Minus |
| 3L | 11102001..11102300 | 504..803 | 100 | <- | Minus |
| 3L | 11102366..11102537 | 332..503 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:51:57 Download gff for
BS20956.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11095101..11095400 | 504..803 | 100 | <- | Minus |
| arm_3L | 11095466..11095637 | 332..503 | 100 | <- | Minus |
| arm_3L | 11095721..11095883 | 169..331 | 100 | <- | Minus |
| arm_3L | 11095955..11096106 | 17..168 | 100 | | Minus |
BS20956.pep Sequence
Translation from 16 to 804
> BS20956.pep
MASLGISFHPFPDQPDERTRNWPLVDSFWTVPVLLSIYLLMVRYAPKWTT
RHKPLQLRAPLFCHSLAMVFLNGYICLELYAATRDLDYNFGCQPCRVSFD
PHEMRLTKAFWWFYISKILEFADTAFFILRQKWSQLSFLHVYHHSTMFVF
CWILIKWMPTGSTYVPAMINSFVHIIMYGYYALSVLGPRVQRFLWWKRYL
TGLQLVQFTIIFFWASQMLVRGCEYGTWITLSMAIYSLPFLFMFGKFYMQ
KYTVSAVGKKPI*
BS20956.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:03:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Elo68alpha-PA | 262 | CG32072-PA | 1..262 | 1..262 | 1445 | 100 | Plus |
| Elo68beta-PB | 269 | CG11801-PB | 16..267 | 9..260 | 1087 | 75.8 | Plus |
| CG5326-PA | 277 | CG5326-PA | 19..269 | 11..259 | 473 | 39 | Plus |
| CG31522-PF | 365 | CG31522-PF | 20..258 | 16..252 | 467 | 38.1 | Plus |
| CG31522-PB | 365 | CG31522-PB | 20..258 | 16..252 | 467 | 38.1 | Plus |
