BS20960.complete Sequence
770 bp assembled on 2011-01-18
GenBank Submission: KX801967
> BS20960.complete
GAAGTTATCAGTCGACATGCTGAAGATTTCCCTGCTGAGCGCCATGCTCG
GCATCGCCTATGCGGGCGTGATTGGACCCGGACCATACTATGGCGGTCCA
GCTGGTCCCGGACCTCTGCACCACTATGGAGGATATGCACCGCAGCATGG
GCCCCTGCCAGGTCCCTATGTGGCGCCCAAGCCGGCTGCTCCCGAACCCT
ACGATCCCGACCCGAAGTACTCCTTTGGCTACGACATCCAGGATGGTTAT
ACTGGTGACCTGAAGTCACAGCACGAGACGCGCCACGGAGATGTGGTGAA
GGGCAGCTACTCGGTTGTGGATCCGGATGGAACCAAACGCACCGTTGACT
ACACAGCGGATCCCCATCACGGATTCAATGCGGTGGTCCGCAAGGAGCCG
CTGGCCTACAAGGCACCAGCCCACCTGGCACCCGTCGTCGCACCTGCACC
CGCTCCAGTACCAGCTCATTACGGCCCAGCTCCGGCGCCTCCACTTCCGC
CGGTGCCTAAGGCTCCTCTGCTTTCGTATCCTCTTGCCTTAGGACCTTAC
CACCGTGGTGCTCCCGCTCCTGCACCAGGTCCCGCTCCCGCTCCTGCTCC
AGCTCCGGTGTCTGTGCCAGTGGCTACTCCAGTCCTGCCCTCCGCCCACT
TCCATGCCGCCTATCCCGCCCTGGCGCACAGCCCCTATGCCCACTATCCG
GCTCCAGGTCCGGCCCCCGCTCCAGTGGAACCCCATGCCTACTACCATCA
CTGAAAGCTTTCTAGACCAT
BS20960.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:11:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr92A-RA | 738 | CG6240-PA | 1..738 | 17..754 | 3675 | 99.9 | Plus |
Cpr62Bb-RC | 585 | CG13935-PC | 146..272 | 261..387 | 230 | 78.7 | Plus |
Cpr62Bb-RB | 585 | CG13935-PB | 146..272 | 261..387 | 230 | 78.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:11:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr92A-RA | 1120 | CG6240-RA | 122..859 | 17..754 | 3675 | 99.9 | Plus |
Cpr62Bb-RC | 926 | CG13935-RC | 286..412 | 261..387 | 230 | 78.7 | Plus |
Cpr62Bb-RB | 992 | CG13935-RB | 352..478 | 261..387 | 230 | 78.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:11:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19597763..19598493 | 754..24 | 3640 | 99.9 | Minus |
3L | 28110227 | 3L | 4208415..4208568 | 391..238 | 185 | 74.7 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:11:20 has no hits.
BS20960.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:39:02 Download gff for
BS20960.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr92A-RA | 116..852 | 17..753 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:49:56 Download gff for
BS20960.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr92A-RA | 122..858 | 17..753 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:58:13 Download gff for
BS20960.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr92A-RA | 122..858 | 17..753 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:58:13 Download gff for
BS20960.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19597764..19598493 | 24..753 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:49:56 Download gff for
BS20960.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15423486..15424215 | 24..753 | 99 | | Minus |
BS20960.pep Sequence
Translation from 16 to 753
> BS20960.pep
MLKISLLSAMLGIAYAGVIGPGPYYGGPAGPGPLHHYGGYAPQHGPLPGP
YVAPKPAAPEPYDPDPKYSFGYDIQDGYTGDLKSQHETRHGDVVKGSYSV
VDPDGTKRTVDYTADPHHGFNAVVRKEPLAYKAPAHLAPVVAPAPAPVPA
HYGPAPAPPLPPVPKAPLLSYPLALGPYHRGAPAPAPGPAPAPAPAPVSV
PVATPVLPSAHFHAAYPALAHSPYAHYPAPGPAPAPVEPHAYYHH*
BS20960.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:02:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr92A-PA | 245 | CG6240-PA | 1..245 | 1..245 | 1374 | 100 | Plus |
Cpr64Aa-PA | 192 | CG15006-PA | 6..192 | 4..213 | 394 | 45.4 | Plus |
Ccp84Ag-PA | 191 | CG2342-PA | 22..183 | 50..225 | 327 | 46.6 | Plus |
Ccp84Ad-PA | 199 | CG2341-PA | 4..199 | 3..245 | 322 | 39.6 | Plus |
Ccp84Ab-PA | 221 | CG1252-PA | 13..221 | 9..245 | 320 | 40 | Plus |