Clone BS20960 Report

Search the DGRC for BS20960

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:209
Well:60
Vector:pDNR-Dual
Associated Gene/TranscriptCpr92A-RA
Protein status:BS20960.pep: full length peptide match
Sequenced Size:770

Clone Sequence Records

BS20960.complete Sequence

770 bp assembled on 2011-01-18

GenBank Submission: KX801967

> BS20960.complete
GAAGTTATCAGTCGACATGCTGAAGATTTCCCTGCTGAGCGCCATGCTCG
GCATCGCCTATGCGGGCGTGATTGGACCCGGACCATACTATGGCGGTCCA
GCTGGTCCCGGACCTCTGCACCACTATGGAGGATATGCACCGCAGCATGG
GCCCCTGCCAGGTCCCTATGTGGCGCCCAAGCCGGCTGCTCCCGAACCCT
ACGATCCCGACCCGAAGTACTCCTTTGGCTACGACATCCAGGATGGTTAT
ACTGGTGACCTGAAGTCACAGCACGAGACGCGCCACGGAGATGTGGTGAA
GGGCAGCTACTCGGTTGTGGATCCGGATGGAACCAAACGCACCGTTGACT
ACACAGCGGATCCCCATCACGGATTCAATGCGGTGGTCCGCAAGGAGCCG
CTGGCCTACAAGGCACCAGCCCACCTGGCACCCGTCGTCGCACCTGCACC
CGCTCCAGTACCAGCTCATTACGGCCCAGCTCCGGCGCCTCCACTTCCGC
CGGTGCCTAAGGCTCCTCTGCTTTCGTATCCTCTTGCCTTAGGACCTTAC
CACCGTGGTGCTCCCGCTCCTGCACCAGGTCCCGCTCCCGCTCCTGCTCC
AGCTCCGGTGTCTGTGCCAGTGGCTACTCCAGTCCTGCCCTCCGCCCACT
TCCATGCCGCCTATCCCGCCCTGGCGCACAGCCCCTATGCCCACTATCCG
GCTCCAGGTCCGGCCCCCGCTCCAGTGGAACCCCATGCCTACTACCATCA
CTGAAAGCTTTCTAGACCAT

BS20960.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:11:21
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr92A-RA 738 CG6240-PA 1..738 17..754 3675 99.9 Plus
Cpr62Bb-RC 585 CG13935-PC 146..272 261..387 230 78.7 Plus
Cpr62Bb-RB 585 CG13935-PB 146..272 261..387 230 78.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:11:22
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr92A-RA 1120 CG6240-RA 122..859 17..754 3675 99.9 Plus
Cpr62Bb-RC 926 CG13935-RC 286..412 261..387 230 78.7 Plus
Cpr62Bb-RB 992 CG13935-RB 352..478 261..387 230 78.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:11:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19597763..19598493 754..24 3640 99.9 Minus
3L 28110227 3L 4208415..4208568 391..238 185 74.7 Minus
Blast to na_te.dros performed on 2014-11-26 16:11:20 has no hits.

BS20960.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:39:02 Download gff for BS20960.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr92A-RA 116..852 17..753 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:49:56 Download gff for BS20960.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr92A-RA 122..858 17..753 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:58:13 Download gff for BS20960.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr92A-RA 122..858 17..753 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:58:13 Download gff for BS20960.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19597764..19598493 24..753 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:49:56 Download gff for BS20960.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15423486..15424215 24..753 99   Minus

BS20960.pep Sequence

Translation from 16 to 753

> BS20960.pep
MLKISLLSAMLGIAYAGVIGPGPYYGGPAGPGPLHHYGGYAPQHGPLPGP
YVAPKPAAPEPYDPDPKYSFGYDIQDGYTGDLKSQHETRHGDVVKGSYSV
VDPDGTKRTVDYTADPHHGFNAVVRKEPLAYKAPAHLAPVVAPAPAPVPA
HYGPAPAPPLPPVPKAPLLSYPLALGPYHRGAPAPAPGPAPAPAPAPVSV
PVATPVLPSAHFHAAYPALAHSPYAHYPAPGPAPAPVEPHAYYHH*

BS20960.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:02:04
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr92A-PA 245 CG6240-PA 1..245 1..245 1374 100 Plus
Cpr64Aa-PA 192 CG15006-PA 6..192 4..213 394 45.4 Plus
Ccp84Ag-PA 191 CG2342-PA 22..183 50..225 327 46.6 Plus
Ccp84Ad-PA 199 CG2341-PA 4..199 3..245 322 39.6 Plus
Ccp84Ab-PA 221 CG1252-PA 13..221 9..245 320 40 Plus