Clone BS20962 Report

Search the DGRC for BS20962

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:209
Well:62
Vector:pDNR-Dual
Associated Gene/TranscriptCG9592-RB
Protein status:BS20962.pep: full length peptide match
Sequenced Size:491

Clone Sequence Records

BS20962.complete Sequence

491 bp assembled on 2011-01-18

GenBank Submission: KX806032

> BS20962.complete
GAAGTTATCAGTCGACATGATACAATTAATAGAAGACCTTGAGCTGCTGC
ACTCGCAAGTCAACAAGGAGTCGTGTAGAGCTCAATTAGTCCTGGCTAGA
GTTAGACTGCATCAGGGTTTTGAACGAATTCCAGCAGAGGCCCAATTGCC
AAGGGGACGACCCTACAAGGCTCTTACTCGCGTCGTAGAGAATGATAACT
ACTGGGGAAAGGTTTTCAAGATGATCCGACTTCCTGTTAACCCGATCCTA
GGATATCTCCTACCCGTAAGGAATATATTCGGCTGTTTGGTGTCAGACAA
TTTGCGAATCGCGAATCGGCATTGGGATAACTGTCTGGATCTGGTAGTTG
AGTGTGCCAATGTCCAAAGAAAACTTCAATCGACTATCAACTCTATAGAG
AATCTGCGAAACCTTCTTAATCAAAGGCAATGTCCTCAGATGTCAAATGA
TAAATTAAAAGTAATACTAAAATAAAAGCTTTCTAGACCAT

BS20962.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:16:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG9592-RB 459 CG9592-PB 1..459 17..475 2295 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:16:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG9592-RB 651 CG9592-RB 168..627 17..476 2300 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:16:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14517992..14518451 17..476 2300 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:16:06 has no hits.

BS20962.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:39:39 Download gff for BS20962.complete
Subject Subject Range Query Range Percent Splice Strand
CG9592-RB 100..556 17..473 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:52:09 Download gff for BS20962.complete
Subject Subject Range Query Range Percent Splice Strand
CG9592-RB 168..624 17..473 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:00:09 Download gff for BS20962.complete
Subject Subject Range Query Range Percent Splice Strand
CG9592-RB 168..624 17..473 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:00:09 Download gff for BS20962.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14517992..14518448 17..473 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:52:09 Download gff for BS20962.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14511092..14511548 17..473 100   Plus

BS20962.pep Sequence

Translation from 16 to 474

> BS20962.pep
MIQLIEDLELLHSQVNKESCRAQLVLARVRLHQGFERIPAEAQLPRGRPY
KALTRVVENDNYWGKVFKMIRLPVNPILGYLLPVRNIFGCLVSDNLRIAN
RHWDNCLDLVVECANVQRKLQSTINSIENLRNLLNQRQCPQMSNDKLKVI
LK*

BS20962.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:03:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG9592-PB 152 CG9592-PB 1..152 1..152 790 100 Plus