BS20964.complete Sequence
860 bp assembled on 2011-01-18
GenBank Submission: KX805085
> BS20964.complete
GAAGTTATCAGTCGACATGAATACCTACGACGAAGTCTTGGCAACAGTGC
TGGACAATTTGCTGGCATCCAAGAACTGTGAGGTGGTCGACGACGTACTG
CGTCAGTCGATGCTGGAACTTTTGCGTGGCAAATTCCGTGAGATTGCACG
TCAGACTACCAATTGGTCCAATCACGCTGGTCGCTGTGCACCCAGCTACT
TCGATCTGGAGCGCACCTTCATCCGGATGAACATCAAGGTGGGCGAGCTA
AAGGCCATGTACGAGGGTCAACCGGATTCGTTGGTCTTGGTTGAGTGCAA
TGCACCGGAGACACAAGACCAGGACTTCCACAGTGTGCCGCAACCCGTGC
TGAGCTCCACAAAGGCCGTGGAATTGGCCTCCACCACGTATATTCCGGAC
CATTTGCCACCATTTCCAGGGGCGCACACCTATAAGAGTTCGACCATTGA
GAAGGTTACGGATCGCAGCTATGTGGCCATGAGGAATCGCCATGCCGAGA
ATGAGCTGAACACCCAAAACGCCTTAAATCAATACTACCTGAGGTGCAAC
CCCAATATATCGCTGTTCGAAGAAACCCAACGCGATGGAAGTGGCCACGT
TTTGGATCTAGGTCCACCCAAGAAACTTCCTTATTCGGACGCCCTGATGC
CAAGAAATCAGGTCTTTGATACGGACATCTATGCTCCCATCGAGGTGATA
ACCCACAAAGCCCTCGACTGCCGTTACTTGGAGAAGCCCAAGTTGCACAG
TTCACGCCCATCCTCAGGAAATTTCGAAGAGGAAGACGTGGAAATGGAGG
AGCCCTGCAGTCCAGGGGGACTAGGTATTGAAAAACCGAATTAAAAGCTT
TCTAGACCAT
BS20964.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:16:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sa-RA | 828 | CG11308-PA | 1..828 | 17..844 | 4140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:16:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sa-RA | 956 | CG11308-RA | 43..871 | 17..845 | 4145 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:16:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21405940..21406518 | 710..132 | 2895 | 100 | Minus |
| 3L | 28110227 | 3L | 21405510..21405646 | 845..709 | 685 | 100 | Minus |
| 3L | 28110227 | 3L | 21406582..21406696 | 131..17 | 575 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:16:10 has no hits.
BS20964.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:39:40 Download gff for
BS20964.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sa-RA | 80..905 | 17..842 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:52:12 Download gff for
BS20964.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sa-RA | 43..868 | 17..842 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:00:11 Download gff for
BS20964.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sa-RA | 43..868 | 17..842 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:00:11 Download gff for
BS20964.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21406582..21406696 | 17..131 | 100 | | Minus |
| 3L | 21405513..21405644 | 711..842 | 100 | <- | Minus |
| 3L | 21405940..21406518 | 132..710 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:52:12 Download gff for
BS20964.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21398613..21398744 | 711..842 | 100 | <- | Minus |
| arm_3L | 21399040..21399618 | 132..710 | 100 | <- | Minus |
| arm_3L | 21399682..21399796 | 17..131 | 100 | | Minus |
BS20964.pep Sequence
Translation from 16 to 843
> BS20964.pep
MNTYDEVLATVLDNLLASKNCEVVDDVLRQSMLELLRGKFREIARQTTNW
SNHAGRCAPSYFDLERTFIRMNIKVGELKAMYEGQPDSLVLVECNAPETQ
DQDFHSVPQPVLSSTKAVELASTTYIPDHLPPFPGAHTYKSSTIEKVTDR
SYVAMRNRHAENELNTQNALNQYYLRCNPNISLFEETQRDGSGHVLDLGP
PKKLPYSDALMPRNQVFDTDIYAPIEVITHKALDCRYLEKPKLHSSRPSS
GNFEEEDVEMEEPCSPGGLGIEKPN*
BS20964.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:03:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sa-PA | 275 | CG11308-PA | 1..275 | 1..275 | 1455 | 100 | Plus |
