BS20969.complete Sequence
680 bp assembled on 2011-01-18
GenBank Submission: KX806073
> BS20969.complete
GAAGTTATCAGTCGACATGAACACCAACACCATCAACCCTCAGGACGACT
GTAGTAACATCTCCAACAAGGATGTAGAGATCGATCGGGACCAGGAGCTC
CAGACATCATCCGAAATCCAGACACCGGAAACACCGCAGACAGGGCGGCG
CAAAAGGATGGACACGCCCATTCGAGTACGTGACATGATCAACCTTTACA
ACTTTGCCACTCAAAAGAACCAGGAACTGGAGATGGCCAAGTCCCTTTAC
TTTGGCGCCATGTCAGAGGAAAACCAGAGGACGGATCTTGAGGGCGGTAG
TAGCCTTTGCAACATGTCCATGTCGGACGACAAGGAAAAAGAAAATGAGA
GTATCCTCCGAGTGAACAAGGAGTCTGCAGTCTTCCAATCGGCCAATACT
GAGCTTCCGTCTGATCCGAATACAGTAGAAAGGTCCTATCAAAGCAAAAC
TACAATTCGACACACTAATAAAGGCGTGCGTATAATCATCGACATATTTT
TTGATAAAAAAGATAGCGAGATAGACATAGTGGGCAGCCGCGTGGAGACG
GACATCCCCGAGAGCCGCATCCTGTCCGATTTCCAGCAGCATTCGCTGGA
CATGAAGAACCAGGAGCTAAAGCCGGGGATCCAGGATGGATCGAGTACCC
CCAAGTCCGCGTAGAAGCTTTCTAGACCAT
BS20969.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:16:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10317-RD | 648 | CG10317-PD | 1..648 | 17..664 | 3240 | 100 | Plus |
| CG10317-RC | 648 | CG10317-PC | 1..648 | 17..664 | 3240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:16:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10317-RD | 1481 | CG10317-RD | 202..850 | 16..664 | 3245 | 100 | Plus |
| CG10317-RC | 965 | CG10317-RC | 202..850 | 16..664 | 3245 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:16:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16370003..16370332 | 345..16 | 1650 | 100 | Minus |
| 3R | 32079331 | 3R | 16369486..16369680 | 664..470 | 975 | 100 | Minus |
| 3R | 32079331 | 3R | 16369816..16369944 | 474..346 | 645 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:16:22 has no hits.
BS20969.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:39:42 Download gff for
BS20969.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10317-RD | 203..850 | 17..664 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:52:17 Download gff for
BS20969.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10317-RC | 203..850 | 17..664 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:00:15 Download gff for
BS20969.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10317-RC | 203..850 | 17..664 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:00:15 Download gff for
BS20969.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16369817..16369944 | 346..473 | 100 | <- | Minus |
| 3R | 16369486..16369676 | 474..664 | 100 | <- | Minus |
| 3R | 16370003..16370331 | 17..345 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:52:17 Download gff for
BS20969.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12195208..12195398 | 474..664 | 100 | <- | Minus |
| arm_3R | 12195539..12195666 | 346..473 | 100 | <- | Minus |
| arm_3R | 12195725..12196053 | 17..345 | 100 | | Minus |
BS20969.pep Sequence
Translation from 16 to 663
> BS20969.pep
MNTNTINPQDDCSNISNKDVEIDRDQELQTSSEIQTPETPQTGRRKRMDT
PIRVRDMINLYNFATQKNQELEMAKSLYFGAMSEENQRTDLEGGSSLCNM
SMSDDKEKENESILRVNKESAVFQSANTELPSDPNTVERSYQSKTTIRHT
NKGVRIIIDIFFDKKDSEIDIVGSRVETDIPESRILSDFQQHSLDMKNQE
LKPGIQDGSSTPKSA*
BS20969.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:03:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10317-PD | 215 | CG10317-PD | 1..215 | 1..215 | 1096 | 100 | Plus |
| CG10317-PC | 215 | CG10317-PC | 1..215 | 1..215 | 1096 | 100 | Plus |
