BS20971.complete Sequence
896 bp assembled on 2011-01-18
GenBank Submission: KX802042
> BS20971.complete
GAAGTTATCAGTCGACATGACGACTAAAAGAACAAGGTTCGATAAAATGA
ACCTGGGAGTACCCGTTCACTCGGACCCCTATGAAGTGGAAAATGAATCG
GCCTCGTCAATAAAAAGAGAAACCGGCGAGAAGGTCATGTCTCATAAGGA
GCTAATGGAAAAACTGCATAAGGAGGTGAAGCTCACGACGCCGGACTTCT
TCGCCCATGATCCATCCTGCAGCTCGGACGACTCCGAAGATTTCGAATTC
CTGGAGACTATCAAAGAGCGAGCCAGACGCATATCCTTCGTACGACGCCG
AAAGCTGCACTACACTGAGTTCTCAACGGTCGAGTTGGCCAGGCGTCTGA
TCCGCGAGGAGTTCACAGAGTCATCGGAGAGTCAACTAAGCGTGGATGAT
GAACATATCTCCGAGATCGCCGAAGAGGAGTGTCCGCCCTGCGGCACAGA
CTCCGACGACTTACTTCCGTACTTCCAATACGATCGGGCTACAGACCAAT
CGATGATTTCCGACGACAGTCTGCCAAAGGAGGATCCCGAGCCCGGATTC
CATCCCGCCCATCATTGCTATAATAAGCTTATAAGCCAGACTCCTGATCC
GCCGATAGTGTACGTTCCCGCGGAACCAGAACCGCAACCGGAACCGCAAC
CGGAACCGCCAGTGGAACCGCGACCGGAACCGGAACCAGAACCAGAACCG
GAAACAGTACTACCACCAACTGCTCCGGAAGTCATTGATAAAACAGCTCC
AGAAGAAGAAAAACACACTAGGGTCCTTGACCGTGGCGAAAATATTGACC
TAAAGAATTTGAGCGCCATACAGAAAAACATAAGTTCGAGTGTGAAAAAA
CATACTGGTCAAAAAACGCGAAATTTATAAAAGCTTTCTAGACCAT
BS20971.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:15:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12620-RB | 864 | CG12620-PB | 1..864 | 17..880 | 4320 | 100 | Plus |
| CG12620-RA | 864 | CG12620-PA | 1..864 | 17..880 | 4320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:15:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12620-RB | 1546 | CG12620-RB | 84..949 | 16..881 | 4330 | 100 | Plus |
| CG12620-RA | 1184 | CG12620-RA | 84..949 | 16..881 | 4330 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:15:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 17087724..17088589 | 16..881 | 4330 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:15:53 has no hits.
BS20971.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:39:37 Download gff for
BS20971.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12620-RA | 85..946 | 17..878 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:52:01 Download gff for
BS20971.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12620-RA | 85..946 | 17..878 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:00:04 Download gff for
BS20971.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12620-RA | 85..946 | 17..878 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:00:04 Download gff for
BS20971.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 17087725..17088586 | 17..878 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:52:01 Download gff for
BS20971.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 17087725..17088586 | 17..878 | 100 | | Plus |
BS20971.pep Sequence
Translation from 16 to 879
> BS20971.pep
MTTKRTRFDKMNLGVPVHSDPYEVENESASSIKRETGEKVMSHKELMEKL
HKEVKLTTPDFFAHDPSCSSDDSEDFEFLETIKERARRISFVRRRKLHYT
EFSTVELARRLIREEFTESSESQLSVDDEHISEIAEEECPPCGTDSDDLL
PYFQYDRATDQSMISDDSLPKEDPEPGFHPAHHCYNKLISQTPDPPIVYV
PAEPEPQPEPQPEPPVEPRPEPEPEPEPETVLPPTAPEVIDKTAPEEEKH
TRVLDRGENIDLKNLSAIQKNISSSVKKHTGQKTRNL*
BS20971.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:03:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12620-PB | 287 | CG12620-PB | 1..287 | 1..287 | 1522 | 100 | Plus |
| CG12620-PA | 287 | CG12620-PA | 1..287 | 1..287 | 1522 | 100 | Plus |
| CG6380-PB | 293 | CG6380-PB | 22..251 | 4..237 | 259 | 30.9 | Plus |
| CG6380-PA | 293 | CG6380-PA | 22..251 | 4..237 | 259 | 30.9 | Plus |
