Clone BS20972 Report

Search the DGRC for BS20972

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:209
Well:72
Vector:pDNR-Dual
Associated Gene/TranscriptCG12674-RA
Protein status:BS20972.pep: full length peptide match
Sequenced Size:977

Clone Sequence Records

BS20972.complete Sequence

977 bp assembled on 2011-01-18

GenBank Submission: KX801888

> BS20972.complete
GAAGTTATCAGTCGACATGGCATCTGGGTTCGTGAACAATAAGCGCAAGC
GGGATGAAGCGCACAATCAGTTCATCTGTCCCATTGTCTACACAAATGAG
TTGCCCACTTATCCAAAGGATTGCAAGTTTCTGCCCTGTGGCCAGAATAT
CCAGGAGTACTGCAAGGAGCCGGTTTCGATTCCCAAACTGGACACTTGTT
TTTCGCTAAATTTCAAAGGACTTCATGAGCTATTCTCCGTTAATTTGATG
GATCAGTCGGCTTACGATAAGCTTTCCGAGAATGTGCAGCCAATGAATCC
CAGAGAAGCTGATCTACTTAAGGACATAAGAGCCCTAGACTGGGACTTCG
CCAGACTCGAACCAAGTCGCGCTCAGGAATGCGCCAAGATGTTCGCCAAG
GAGCGAGTGCATCCACCTCTCCCAGGACTACAGCGTTCTGTGGCGGTGCC
CAAGGCCCCAAAAGACCTGCAGCCGGTCAGCCTGGAGCAACAAAAGGCGA
TGATTGATGCGAGCTTCAAGGATATTGGCAAACCCCTCTACCGACATCCC
ACCAATCCGGGTAGCAATGCCTACCCTGTGCAGGTCTTGCCAGTCTTTCC
CGATACGGATTTGCAGAAATATAGCTTCGTCCAGATGAGTTTTGATAATC
CACCCCAAAATAGCAACCAGGGACTAATCAGGGACTGCGGAAGCTGTCTG
ATCAACTTCAGTTTCGTCCAGGACATTGCGGACTCTACCGAAAAGGTTTA
CGTATCCGACCATCGCTACAGAGAGGAAAAAGCCGACGATAGCTTGGAGC
GCGGTGAGGGTTACATACTCCGCGAGGAGAATGACGCCATCTTTTACGTT
GGTGTCGACAAATACATCAAATTAAGGCGGGAACGTCCACGCCCACACGT
TTCGGCTAACAAGTTTCTGCTGAAGGTCCAGCGTGTGGGAATGAATACAA
CTACCGATTAAAAGCTTTCTAGACCAT

BS20972.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:15:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG12674-RA 945 CG12674-PA 1..945 17..961 4725 100 Plus
CG12674-RB 942 CG12674-PB 1..942 17..961 4645 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:15:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG12674-RA 1219 CG12674-RA 159..1104 17..962 4730 100 Plus
CG12674-RB 1216 CG12674-RB 159..1101 17..962 4650 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:15:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2080208..2081066 64..922 4295 100 Plus
2L 23513712 2L 2080077..2080123 17..63 235 100 Plus
2L 23513712 2L 2081131..2081171 922..962 205 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:15:57 has no hits.

BS20972.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:39:38 Download gff for BS20972.complete
Subject Subject Range Query Range Percent Splice Strand
CG12674-RA 101..1043 17..959 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:52:04 Download gff for BS20972.complete
Subject Subject Range Query Range Percent Splice Strand
CG12674-RA 159..1101 17..959 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:00:05 Download gff for BS20972.complete
Subject Subject Range Query Range Percent Splice Strand
CG12674-RA 159..1101 17..959 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:00:05 Download gff for BS20972.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2080077..2080123 17..63 100 -> Plus
2L 2080208..2081066 64..922 100 -> Plus
2L 2081132..2081168 923..959 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:52:04 Download gff for BS20972.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2080077..2080123 17..63 100 -> Plus
arm_2L 2080208..2081066 64..922 100 -> Plus
arm_2L 2081132..2081168 923..959 100   Plus

BS20972.pep Sequence

Translation from 16 to 960

> BS20972.pep
MASGFVNNKRKRDEAHNQFICPIVYTNELPTYPKDCKFLPCGQNIQEYCK
EPVSIPKLDTCFSLNFKGLHELFSVNLMDQSAYDKLSENVQPMNPREADL
LKDIRALDWDFARLEPSRAQECAKMFAKERVHPPLPGLQRSVAVPKAPKD
LQPVSLEQQKAMIDASFKDIGKPLYRHPTNPGSNAYPVQVLPVFPDTDLQ
KYSFVQMSFDNPPQNSNQGLIRDCGSCLINFSFVQDIADSTEKVYVSDHR
YREEKADDSLERGEGYILREENDAIFYVGVDKYIKLRRERPRPHVSANKF
LLKVQRVGMNTTTD*

BS20972.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:03:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG12674-PA 314 CG12674-PA 1..314 1..314 1672 100 Plus
CG12674-PB 313 CG12674-PB 1..313 1..314 1655 99.7 Plus