BS20974.complete Sequence
785 bp assembled on 2011-01-18
GenBank Submission: KX805754
> BS20974.complete
GAAGTTATCAGTCGACATGGCCATCCTGGAGTCTTGTTGCTTTTGGAAGG
ATGTGCGGAGTGGCAGCTTTGCCTGCGCCATCTACACGTTGGTTTACTTT
GGCTTCTCGACGCTGATGTTTTTGTTCTACCTAATCGAGGAACAGGACTT
TCTGCTGGGTAACCGTGCTCAGCCGCTGGGTGAAAGTTTGCTGGAGAAGG
GCGATGTGACTGTAGTGACTGTGATATTCAACATTTTGTTGCTCTTTTGC
TCCATACTGATGGTGCTATCGTCGGTTCTGCTCATATTGGGCCTCCAGCA
GAACAAGAGACATCTGCTGATACCCTGGATTAGTTTCATGCTGGGCGATC
TGCTCATCGAGGTCTGCCACTTGGTCCACTTGGCCCTATCCCGCCGCGTC
AAGTTCGATCCGATTGTCGGTTTCATCTTTACCATGGATTTCTTCCTACT
GTGCCTCAATCTTTACTGTCTGCTGTGCGTCATCTCGCAGTACCAGACGT
TCCGTTCCCAGCGGGCGGAGATGCGACTGGCGGCCTCGACGGCATCGCCT
ATTGTGGTCTTCACAGCAGCGGAGAAGCTAACCAAAGCACAGCAACAGCA
ACTGCACAATAATCTGTTGCAGCAGCTGGAGACCGGAAGCGGATATGGCA
AGCGGCGACGTATGCTCGGAGCAGCCAGCCCGCTAATAACTTCGCAGCGG
CCTACCAACTTCTCCACCATCACCGAGGAGGAGGAGCAGCAGTCCCGAAC
AGCACTGCCAGGAATATAAAAGCTTTCTAGACCAT
BS20974.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:16:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13288-RB | 753 | CG13288-PB | 1..753 | 17..769 | 3765 | 100 | Plus |
| CG13288-RC | 822 | CG13288-PC | 1..736 | 17..752 | 3680 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:16:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13288-RB | 1709 | CG13288-RB | 425..1177 | 17..769 | 3765 | 100 | Plus |
| CG13288-RC | 1392 | CG13288-RC | 425..1160 | 17..752 | 3680 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:16:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5909391..5909596 | 547..752 | 1030 | 100 | Plus |
| 3L | 28110227 | 3L | 5908969..5909130 | 299..460 | 810 | 100 | Plus |
| 3L | 28110227 | 3L | 5908583..5908707 | 91..215 | 625 | 100 | Plus |
| 3L | 28110227 | 3L | 5908812..5908899 | 214..301 | 440 | 100 | Plus |
| 3L | 28110227 | 3L | 5909210..5909296 | 461..547 | 435 | 100 | Plus |
| 3L | 28110227 | 3L | 5907805..5907881 | 17..93 | 385 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:16:39 has no hits.
BS20974.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:39:44 Download gff for
BS20974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13288-RB | 401..1151 | 17..767 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:52:26 Download gff for
BS20974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13288-RB | 425..1175 | 17..767 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:00:21 Download gff for
BS20974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13288-RB | 425..1175 | 17..767 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:00:21 Download gff for
BS20974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5908584..5908707 | 92..215 | 100 | -> | Plus |
| 3L | 5908814..5908899 | 216..301 | 100 | -> | Plus |
| 3L | 5908972..5909130 | 302..460 | 100 | -> | Plus |
| 3L | 5909210..5909296 | 461..547 | 100 | -> | Plus |
| 3L | 5909392..5909596 | 548..752 | 100 | -> | Plus |
| 3L | 5907805..5907879 | 17..91 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:52:26 Download gff for
BS20974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5900905..5900979 | 17..91 | 100 | -> | Plus |
| arm_3L | 5901684..5901807 | 92..215 | 100 | -> | Plus |
| arm_3L | 5901914..5901999 | 216..301 | 100 | -> | Plus |
| arm_3L | 5902072..5902230 | 302..460 | 100 | -> | Plus |
| arm_3L | 5902310..5902396 | 461..547 | 100 | -> | Plus |
| arm_3L | 5902492..5902696 | 548..752 | 100 | -> | Plus |
BS20974.pep Sequence
Translation from 16 to 768
> BS20974.pep
MAILESCCFWKDVRSGSFACAIYTLVYFGFSTLMFLFYLIEEQDFLLGNR
AQPLGESLLEKGDVTVVTVIFNILLLFCSILMVLSSVLLILGLQQNKRHL
LIPWISFMLGDLLIEVCHLVHLALSRRVKFDPIVGFIFTMDFFLLCLNLY
CLLCVISQYQTFRSQRAEMRLAASTASPIVVFTAAEKLTKAQQQQLHNNL
LQQLETGSGYGKRRRMLGAASPLITSQRPTNFSTITEEEEQQSRTALPGI
*
BS20974.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:04:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13288-PB | 250 | CG13288-PB | 1..250 | 1..250 | 1268 | 100 | Plus |
| CG13288-PC | 273 | CG13288-PC | 1..245 | 1..245 | 1243 | 100 | Plus |
