Clone BS20975 Report

Search the DGRC for BS20975

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:209
Well:75
Vector:pDNR-Dual
Associated Gene/TranscriptCG13747-RA
Protein status:BS20975.pep: gold
Sequenced Size:701

Clone Sequence Records

BS20975.complete Sequence

701 bp assembled on 2011-01-18

GenBank Submission: KX800437

> BS20975.complete
GAAGTTATCAGTCGACATGGCCCCCAACGATCCATCGCATCCTGGTGGAA
AGTCAACCGCCGTGGCGATGGCCACCAGCCACACCATCTCATACGTGCAA
TGCCAGAACCTCAAATACAACGTCATTATCCTCGGCTGGCTGGGCGTGAT
CATCTCCACCGTCATCTTGGGCAGCTCGGCGCTGACCATCCACTTTCGTC
CGGACATCGAGCTGCTGCTAAACCAGTGGCCCATGAACTTGGTCCCGGTC
GCAGAACAGCAGCTACTGATCAATTTGTTGACCATCTTTAGCTCCATTGT
GTACGGACTGTCGCTGATCAACATGGGCGTCAGTCTGCTGCTGCTGATTG
GTATTGCCCGGGACTCAAGCTGCCTAATTTATCCTTGGCTGATCTATCAT
GGCGTTATTTTTGGCTTTGGTCTTTACTTGGGGGTTTTCTACGCGACCGC
AGGTCTGTTCATTGACCTGTCGAGCTTTCTAATGTGTCTTCTGGTGTTCA
ACCTTGTGCTGGTTATATTTTATAAGATCTATCACGAGGTCTTCACCCTA
TTTCGCGTGATGGAGCAGCTGTCGAAGGATGGCGGAATGGGCGGACTCTA
CTACCAGGATGCGGAGCATGGATGGACTGCGGCTGGGGTTCCCTTTCAAC
ATGTCTATGTGCCGCGTCTGCCGATGCAAAAGTAAAAGCTTTCTAGACCA
T

BS20975.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:16:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG13747-RA 669 CG13747-PA 1..669 17..685 3345 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:16:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG13747-RA 979 CG13747-RA 151..821 15..685 3355 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:16:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9017965..9018225 15..275 1305 100 Plus
2R 25286936 2R 9018701..9018874 512..685 870 100 Plus
2R 25286936 2R 9018497..9018648 361..512 760 100 Plus
2R 25286936 2R 9018290..9018376 276..362 435 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:16:44 has no hits.

BS20975.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:39:45 Download gff for BS20975.complete
Subject Subject Range Query Range Percent Splice Strand
CG13747-RA 113..773 17..677 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:52:28 Download gff for BS20975.complete
Subject Subject Range Query Range Percent Splice Strand
CG13747-RA 153..813 17..677 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:00:23 Download gff for BS20975.complete
Subject Subject Range Query Range Percent Splice Strand
CG13747-RA 153..813 17..677 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:00:23 Download gff for BS20975.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9018702..9018866 513..677 100   Plus
2R 9017967..9018225 17..275 100 -> Plus
2R 9018290..9018375 276..361 100 -> Plus
2R 9018498..9018648 362..512 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:52:28 Download gff for BS20975.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4905472..4905730 17..275 100 -> Plus
arm_2R 4905795..4905880 276..361 100 -> Plus
arm_2R 4906003..4906153 362..512 100 -> Plus
arm_2R 4906207..4906371 513..677 100   Plus

BS20975.pep Sequence

Translation from 16 to 684

> BS20975.pep
MAPNDPSHPGGKSTAVAMATSHTISYVQCQNLKYNVIILGWLGVIISTVI
LGSSALTIHFRPDIELLLNQWPMNLVPVAEQQLLINLLTIFSSIVYGLSL
INMGVSLLLLIGIARDSSCLIYPWLIYHGVIFGFGLYLGVFYATAGLFID
LSSFLMCLLVFNLVLVIFYKIYHEVFTLFRVMEQLSKDGGMGGLYYQDAE
HGWTAAGVPFQHVYVPRLPMQK*

BS20975.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:04:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG13747-PA 222 CG13747-PA 1..222 1..222 1155 100 Plus
CG15098-PA 186 CG15098-PA 2..160 24..183 156 26.4 Plus