BS20980.complete Sequence
884 bp assembled on 2011-01-18
GenBank Submission: KX805773
> BS20980.complete
GAAGTTATCAGACGACATGTCTAAGAATCCACTTCGATTGTTCATAAAAC
CTGTAATTCTTCGCCGCCTGTCTGATAAGCCCAAGTTGAGCAACAAGCCA
TCGAACACCCCTCGCCCACCAAAGGATCCACCGGATGAGGGCTACCAACC
GACCAGTGTCGATCACAATGGGATCGATGTGCCGCCGTTTGTGAGACCCT
CTTCCTTCCGCCAGTTCAGTGGACCGGATGAGAAGCTGGGACCAGGAGCA
GGCAAAGCGCTGCCCTACAAGAACCCAACTTACTTTGGCTATCATCGATT
CTCATTTATGGAACTCACGGTCACGGCTGTGGAGTTACGAGACGAACGTC
GATTGGACGGAGGACTACAGGCATCCATCGAAGCCGACGAAGAATCCGAG
TGTGGCGAGGCCCAACTGGAGACCATGAAGAAGCTGGAAAGCGAGTGCGA
TGCGATACTCTCCAACCAAGCCAAGAAAATCCAGAAGGCCAAATCTTCGG
CCGAGGAGAAGTGTCTCCAGGAGATGAGTGAGGAGGAGCTAAAGGAGTGG
TGCAAGAAAAAGGAGGAGGACATCAAAAAGAAGGAGCAGGAAAAGAAGGA
GGCCAAGTCCTCGCCCAAGGAGAAGAAAATCCAGGACATGAGCGAGGAGG
AACTGAAGGCTTGGTGCCAGAAAAAGGAAGAGGACATCAAAAAGAAGGAG
CAGGAAAAGAAGGAGGCCAAGTCCTCGCCCAAGGAGAAGAAAGTCCAGGA
CATGAGCGAGGATGAACTGAAAGCTTGGTGCCAAAAGAAGGAAGAAGACA
TCAAAAAGAAGGAGCAACAAAAGAAGGAGGAAGGAAAGTGTGAAGGCGAT
GACAACAAAAAGGATTAAAAGCTTTCTAGACCAT
BS20980.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:16:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11815-RA | 852 | CG11815-PA | 1..852 | 17..868 | 4260 | 100 | Plus |
| CG11815-RA | 852 | CG11815-PA | 470..700 | 600..830 | 795 | 89.6 | Plus |
| CG11815-RA | 852 | CG11815-PA | 584..814 | 486..716 | 795 | 89.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:17:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11815-RA | 1010 | CG11815-RA | 71..923 | 17..869 | 4265 | 100 | Plus |
| CG11815-RA | 1010 | CG11815-RA | 540..770 | 600..830 | 795 | 89.6 | Plus |
| CG11815-RA | 1010 | CG11815-RA | 654..884 | 486..716 | 795 | 89.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:16:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1970278..1971130 | 869..17 | 4265 | 100 | Minus |
| 3L | 28110227 | 3L | 1970317..1970547 | 716..486 | 795 | 89.6 | Minus |
| 3L | 28110227 | 3L | 1970431..1970661 | 830..600 | 795 | 89.6 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:16:58 has no hits.
BS20980.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:39:47 Download gff for
BS20980.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11815-RA | 180..1029 | 17..866 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:52:34 Download gff for
BS20980.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11815-RA | 71..920 | 17..866 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:00:29 Download gff for
BS20980.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11815-RA | 71..920 | 17..866 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:00:29 Download gff for
BS20980.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1970281..1971130 | 17..866 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:52:34 Download gff for
BS20980.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1970281..1971130 | 17..866 | 100 | | Minus |
BS20980.pep Sequence
Translation from 16 to 867
> BS20980.pep
MSKNPLRLFIKPVILRRLSDKPKLSNKPSNTPRPPKDPPDEGYQPTSVDH
NGIDVPPFVRPSSFRQFSGPDEKLGPGAGKALPYKNPTYFGYHRFSFMEL
TVTAVELRDERRLDGGLQASIEADEESECGEAQLETMKKLESECDAILSN
QAKKIQKAKSSAEEKCLQEMSEEELKEWCKKKEEDIKKKEQEKKEAKSSP
KEKKIQDMSEEELKAWCQKKEEDIKKKEQEKKEAKSSPKEKKVQDMSEDE
LKAWCQKKEEDIKKKEQQKKEEGKCEGDDNKKD*
BS20980.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:04:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11815-PA | 283 | CG11815-PA | 1..283 | 1..283 | 1487 | 100 | Plus |
| rudhira-PE | 2075 | CG43154-PE | 1496..1647 | 122..282 | 183 | 32.1 | Plus |
| rudhira-PC | 2075 | CG43154-PC | 1496..1647 | 122..282 | 183 | 32.1 | Plus |
| rudhira-PE | 2075 | CG43154-PE | 1443..1603 | 106..274 | 177 | 29.6 | Plus |
| rudhira-PC | 2075 | CG43154-PC | 1443..1603 | 106..274 | 177 | 29.6 | Plus |
| rudhira-PE | 2075 | CG43154-PE | 1432..1597 | 122..283 | 174 | 29.8 | Plus |
| rudhira-PC | 2075 | CG43154-PC | 1432..1597 | 122..283 | 174 | 29.8 | Plus |
| CG2839-PA | 826 | CG2839-PA | 243..415 | 112..282 | 172 | 30.2 | Plus |
| CG2839-PA | 826 | CG2839-PA | 304..465 | 124..276 | 170 | 26.5 | Plus |
| rudhira-PE | 2075 | CG43154-PE | 1349..1513 | 110..283 | 169 | 31.1 | Plus |
| rudhira-PE | 2075 | CG43154-PE | 1418..1562 | 122..271 | 169 | 30.7 | Plus |
| rudhira-PC | 2075 | CG43154-PC | 1349..1513 | 110..283 | 169 | 31.1 | Plus |
| rudhira-PC | 2075 | CG43154-PC | 1418..1562 | 122..271 | 169 | 30.7 | Plus |
| CG2839-PA | 826 | CG2839-PA | 571..743 | 109..283 | 168 | 27 | Plus |
| rudhira-PE | 2075 | CG43154-PE | 1378..1541 | 122..283 | 167 | 29.8 | Plus |
| rudhira-PC | 2075 | CG43154-PC | 1378..1541 | 122..283 | 167 | 29.8 | Plus |
| CG2839-PA | 826 | CG2839-PA | 550..726 | 106..283 | 165 | 24.9 | Plus |
| CG2839-PA | 826 | CG2839-PA | 305..449 | 131..283 | 163 | 26.8 | Plus |
| CG2839-PA | 826 | CG2839-PA | 377..514 | 151..283 | 162 | 28.1 | Plus |
| CG2839-PA | 826 | CG2839-PA | 392..555 | 124..283 | 162 | 24.6 | Plus |
| CG2839-PA | 826 | CG2839-PA | 543..714 | 109..283 | 162 | 22.9 | Plus |
| CG2839-PA | 826 | CG2839-PA | 339..502 | 125..283 | 161 | 26.2 | Plus |
| CG2839-PA | 826 | CG2839-PA | 619..748 | 151..276 | 158 | 29.5 | Plus |
| rudhira-PE | 2075 | CG43154-PE | 1463..1632 | 108..274 | 157 | 28.3 | Plus |
| rudhira-PC | 2075 | CG43154-PC | 1463..1632 | 108..274 | 157 | 28.3 | Plus |
| CG2839-PA | 826 | CG2839-PA | 316..482 | 109..282 | 157 | 24.1 | Plus |
| CG2839-PA | 826 | CG2839-PA | 271..438 | 124..283 | 156 | 23.2 | Plus |
| rudhira-PE | 2075 | CG43154-PE | 1400..1569 | 118..283 | 155 | 29 | Plus |
| rudhira-PC | 2075 | CG43154-PC | 1400..1569 | 118..283 | 155 | 29 | Plus |
| CG2839-PA | 826 | CG2839-PA | 521..690 | 110..283 | 155 | 24.9 | Plus |
| CG13337-PB | 680 | CG13337-PB | 536..680 | 125..274 | 153 | 27.2 | Plus |
| CG2839-PA | 826 | CG2839-PA | 431..600 | 108..283 | 151 | 22.6 | Plus |
