BS20983.complete Sequence
887 bp assembled on 2011-01-18
GenBank Submission: KX803273
> BS20983.complete
GAAGTTATCAGTCGACATGGCAGCCAGTAAGTCCCAGATCGAGGAGCTGT
ACGACTTTATCTATCCGCTCGCAGTGAGAGCTGGGGAAATCCTGTTGGAA
GGCTATCAAAATGCTGGCAAGGCGGTGGCCCTCAAGGACGGGGAGTTCTA
TAATGTAGTCACTGCCTATGATAACCAGATAGAGGAGTTTCTCGTGGAGA
AAATACTGGCGCGCTACCCGGATCACAAATTCATTGGGGAAGAGGATACC
CACAAGAATGACAATGTAACGAAAGAGCTGACGGATGCTCCAACTTGGAT
CATAGATCCCATCGATGGAACCTCGAACTTTATCAAACAAATTCCACATG
TCTCGGTTTCAATTGGATTGTCCATTAAGAAACAGATCGTGCTGGGTGTA
GTTAACAATCCCGCACAGAATAAGTTATATACCGCGAAATTGGGCCAGGG
TGCCTTTTGCAATGGGAAACCAATTCAGGTGAGCAGCTGTGAACATCTCA
ACGATGCTAATGTGGCATACGAGGTTTGCTTGCTGCACGCTCCAAAGATC
CGGAACAAGCACATCAAAAGAATCTACCATGTGGGATCCAATGCCAGAAG
ACTCCTGGCATATTCCGCTGTAGTGGATTCCCTTTGCATGGTGGCCGCAG
GCAACTTGGATGCCTTTCATATTGAAGACATGTATCCCTGGGATTGTGCA
GCTGGCTATTTGCTCATCCGTGAGGCCGGCGGAGTTGTCACGCATCCCTA
CGGCGGACCCTTCGATATCATGAAGCCAGATCTAATCTGCGCCGGAACGG
AGACACTGAGAGCTGAGATAGAGCATCTTATTCGGAAGGCTGATCAGGAG
AAGCATGTGGGAGGAGAGTGAAAGCTTTCTAGACCAT
BS20983.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:16:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17026-RA | 855 | CG17026-PA | 1..855 | 17..871 | 4275 | 100 | Plus |
| CG17027-RB | 867 | CG17027-PB | 142..787 | 158..803 | 1070 | 77.7 | Plus |
| CG17027-RA | 867 | CG17027-PA | 142..787 | 158..803 | 1070 | 77.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:16:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17026-RA | 1004 | CG17026-RA | 91..945 | 17..871 | 4275 | 100 | Plus |
| CG17027-RB | 1558 | CG17027-RB | 412..1057 | 158..803 | 1070 | 77.7 | Plus |
| CG17027-RA | 1362 | CG17027-RA | 216..861 | 158..803 | 1070 | 77.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:16:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15975458..15976041 | 17..600 | 2920 | 100 | Plus |
| 3L | 28110227 | 3L | 15976097..15976369 | 599..871 | 1365 | 100 | Plus |
| 3L | 28110227 | 3L | 15980511..15980951 | 158..598 | 735 | 77.8 | Plus |
| 3L | 28110227 | 3L | 15981203..15981387 | 619..803 | 355 | 79.5 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:16:26 has no hits.
BS20983.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:39:42 Download gff for
BS20983.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17026-RA | 77..930 | 17..870 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:52:19 Download gff for
BS20983.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17026-RA | 91..944 | 17..870 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:00:17 Download gff for
BS20983.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17026-RA | 91..944 | 17..870 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:00:17 Download gff for
BS20983.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15975458..15976041 | 17..600 | 100 | -> | Plus |
| 3L | 15976099..15976368 | 601..870 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:52:19 Download gff for
BS20983.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15968558..15969141 | 17..600 | 100 | -> | Plus |
| arm_3L | 15969199..15969468 | 601..870 | 100 | | Plus |
BS20983.pep Sequence
Translation from 16 to 870
> BS20983.pep
MAASKSQIEELYDFIYPLAVRAGEILLEGYQNAGKAVALKDGEFYNVVTA
YDNQIEEFLVEKILARYPDHKFIGEEDTHKNDNVTKELTDAPTWIIDPID
GTSNFIKQIPHVSVSIGLSIKKQIVLGVVNNPAQNKLYTAKLGQGAFCNG
KPIQVSSCEHLNDANVAYEVCLLHAPKIRNKHIKRIYHVGSNARRLLAYS
AVVDSLCMVAAGNLDAFHIEDMYPWDCAAGYLLIREAGGVVTHPYGGPFD
IMKPDLICAGTETLRAEIEHLIRKADQEKHVGGE*
BS20983.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:03:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17026-PA | 284 | CG17026-PA | 1..284 | 1..284 | 1492 | 100 | Plus |
| CG17027-PB | 288 | CG17027-PB | 5..284 | 4..284 | 1170 | 77.6 | Plus |
| CG17027-PA | 288 | CG17027-PA | 5..284 | 4..284 | 1170 | 77.6 | Plus |
| CG17029-PB | 284 | CG17029-PB | 4..277 | 2..277 | 675 | 45.3 | Plus |
| CG17029-PA | 284 | CG17029-PA | 4..277 | 2..277 | 675 | 45.3 | Plus |
