BS20987.complete Sequence
682 bp assembled on 2011-01-18
GenBank Submission: KX804776
> BS20987.complete
GAAGTTATCAGTCGACATGGTGTTGCCGAGCAAAAAGTATAAAACCGACT
ACACGGAGAACTCCTATCGTGCCCACATGAAGCTGACGATAAGAAACCTA
CAATATGGTGACTTTGGCAACTATCGATGCATCTCGAAGAACTCGCTGGG
GGAAACGGAAGGCTCCATACGTGTTTACGAAATACCTTTGCCATCCACAC
CATCCAAGCAGGTTACCCACACCACCGTCGAGTCCAGGGAGAACAATATC
ATACCCTCATCACGCAACGACACAACGAAATCCCTGCAAACGGATGTGGG
ATATGCCATGAAGAACGATTTATATCCAGGCTCGGCCTCCTCGTCATCTT
CGGGAGGCAGTTCCTCGGCGGCCTCGTCCTCCTCCTCGATGCAGACCTCG
GCATTGCCAGGAGGAGTGGCGGGAAATAGTCTATCATCGATGGGCTCCAA
AGGATCCTTGGCGATAGGCAAGAGCACGTTCTACACAGAACGACCACCGA
ATGAGTACGCCGCCTCGTCAGTGGCTGGCCTGCTGCTTCATAGAGCATTG
CTGTTCGGCTCTGGAATCTATCTGACCCTGCTTTGAAAGCTTTCTAGACC
ATTCGTTTGGCGCGCAAAAGGGGGGTGAAGTGGTCATAATCAATAATCAT
AATTCGATAAATCAATAATCCAAACAAAACCT
BS20987.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:17:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34391-RE | 1410 | CG34391-PE | 841..1410 | 17..586 | 2850 | 100 | Plus |
| CG34391-RD | 1410 | CG34391-PD | 841..1410 | 17..586 | 2850 | 100 | Plus |
| CG34391-RB | 570 | CG34391-PB | 1..570 | 17..586 | 2850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:17:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34391-RE | 4735 | CG34391-RE | 1359..1930 | 17..588 | 2860 | 100 | Plus |
| CG34391-RD | 2139 | CG34391-RD | 1359..1930 | 17..588 | 2860 | 100 | Plus |
| CG34391-RB | 882 | CG34391-RB | 102..673 | 17..588 | 2860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:17:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5439190..5439471 | 243..524 | 1410 | 100 | Plus |
| 3L | 28110227 | 3L | 5436522..5436632 | 69..179 | 555 | 100 | Plus |
| 3L | 28110227 | 3L | 5439530..5439594 | 524..588 | 325 | 100 | Plus |
| 3L | 28110227 | 3L | 5437712..5437775 | 179..242 | 320 | 100 | Plus |
| 3L | 28110227 | 3L | 5436260..5436312 | 17..69 | 265 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:17:12 has no hits.
BS20987.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:39:48 Download gff for
BS20987.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34391-RB | 62..633 | 17..588 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:52:40 Download gff for
BS20987.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34391-RB | 62..633 | 17..588 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:00:33 Download gff for
BS20987.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34391-RB | 102..673 | 17..588 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:00:33 Download gff for
BS20987.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5436260..5436312 | 17..69 | 100 | -> | Plus |
| 3L | 5436523..5436632 | 70..179 | 100 | -> | Plus |
| 3L | 5437713..5437775 | 180..242 | 100 | -> | Plus |
| 3L | 5439190..5439471 | 243..524 | 100 | -> | Plus |
| 3L | 5439531..5439594 | 525..588 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:52:40 Download gff for
BS20987.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5429360..5429412 | 17..69 | 100 | -> | Plus |
| arm_3L | 5429623..5429732 | 70..179 | 100 | -> | Plus |
| arm_3L | 5430813..5430875 | 180..242 | 100 | -> | Plus |
| arm_3L | 5432290..5432571 | 243..524 | 100 | -> | Plus |
| arm_3L | 5432631..5432694 | 525..588 | 100 | | Plus |
BS20987.pep Sequence
Translation from 16 to 585
> BS20987.pep
MVLPSKKYKTDYTENSYRAHMKLTIRNLQYGDFGNYRCISKNSLGETEGS
IRVYEIPLPSTPSKQVTHTTVESRENNIIPSSRNDTTKSLQTDVGYAMKN
DLYPGSASSSSSGGSSSAASSSSSMQTSALPGGVAGNSLSSMGSKGSLAI
GKSTFYTERPPNEYAASSVAGLLLHRALLFGSGIYLTLL*
BS20987.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:58:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34391-PB | 189 | CG34391-PB | 1..189 | 1..189 | 953 | 100 | Plus |
| CG34391-PE | 469 | CG34391-PE | 281..469 | 1..189 | 953 | 100 | Plus |
| CG34391-PD | 469 | CG34391-PD | 281..469 | 1..189 | 953 | 100 | Plus |
| CG31646-PA | 606 | CG31646-PA | 367..522 | 1..147 | 177 | 30.1 | Plus |
| CG31708-PC | 512 | CG31708-PC | 358..511 | 5..150 | 168 | 33.1 | Plus |
