Clone BS20993 Report

Search the DGRC for BS20993

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:209
Well:93
Vector:pDNR-Dual
Associated Gene/TranscriptCG30338-RA
Protein status:BS20993.pep: full length peptide match
Sequenced Size:899

Clone Sequence Records

BS20993.complete Sequence

899 bp assembled on 2011-01-28

GenBank Submission: KX801533

> BS20993.complete
GAAGTTATCAGTCGACATGGCCGATGAGGAGCTGCAAACCTACCGTCGCT
GCGTTGGCCTGCAGCTGGAGGAGCTGGAGCTGCTGAGCTCCATATACTGC
GCGCCCGGAGAGCTGCATATGCTCGATGCCGGCGTAGTGGCTGATTTCAA
TGAGTTTCTCAAGGATGATAAGACAAAACCCGCTACTAGCCTTCTATCCC
ATTTGGAGTATGTGGTCAAATTGACTCTACCAGGCAAACAGTGCGTGGAA
GTGCGAGTGGAACTGCCGCACCTATATCCGCTTTTGGAGCAGGCACGCGT
CAGTGTACACACTACGCTACTGGGAAAATCCAAGGAGCAGCGCTTAAAGA
ATGATTTGGAGCAGTATCATGGTGAAAGGCGGGAGGAGGACGCCGAGCCG
TACATCTTCCAGCTGCTGAGCTGGCTGCAGGACCGCATCGAGGATCTGTT
AAAACGACCAGCTTCCGAGTTTGAAGTGCAGCAGGTAGCATCATCAGACC
CGCAACAGCCACCAGCTACGGAACTTCAGAGAATTTGGATTTATTCGCAT
CACATCAAATCCAGTGCCAAGCGGCAGGAGCTGATTCGGCAGGCCCGACA
GTTGGAGCTCACAGGATTCAGTAGACCCGGTAAACCGGGCATCATATGCG
TGGAAGGTGATTCGGCAAATGTACAGGAATTCTGGCGCACCATCAAGGCC
CTGCGCTGGCAGAAGATCAGCGTGGTGCGGACGGAGCCTCGGCAGCGCAA
GCGGGGATTCGAGGACTTCAGCGAACAGCTTTTTAATGCCGAAGAAGGCG
TCATGAACATGGGCCAGTTCATTCGATTCCTCGAAGCCCACGGATTTGGC
TACATGAAGTCGGAATTGTTTGGTTTAGCCTGAAAGCTTTCTAGACCAT

BS20993.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:31:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG30338-RA 867 CG30338-PA 1..867 17..883 4335 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:31:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG30338-RA 1039 CG30338-RA 117..984 16..883 4340 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:31:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9598583..9599450 16..883 4340 100 Plus
Blast to na_te.dros performed on 2014-11-26 22:31:50 has no hits.

BS20993.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-14 14:31:46 Download gff for BS20993.complete
Subject Subject Range Query Range Percent Splice Strand
CG30338-RA 116..981 17..882 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:01:05 Download gff for BS20993.complete
Subject Subject Range Query Range Percent Splice Strand
CG30338-RA 118..983 17..882 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:03:37 Download gff for BS20993.complete
Subject Subject Range Query Range Percent Splice Strand
CG30338-RA 118..983 17..882 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:03:37 Download gff for BS20993.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9598584..9599449 17..882 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:01:05 Download gff for BS20993.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5486089..5486954 17..882 100   Plus

BS20993.pep Sequence

Translation from 16 to 882

> BS20993.pep
MADEELQTYRRCVGLQLEELELLSSIYCAPGELHMLDAGVVADFNEFLKD
DKTKPATSLLSHLEYVVKLTLPGKQCVEVRVELPHLYPLLEQARVSVHTT
LLGKSKEQRLKNDLEQYHGERREEDAEPYIFQLLSWLQDRIEDLLKRPAS
EFEVQQVASSDPQQPPATELQRIWIYSHHIKSSAKRQELIRQARQLELTG
FSRPGKPGIICVEGDSANVQEFWRTIKALRWQKISVVRTEPRQRKRGFED
FSEQLFNAEEGVMNMGQFIRFLEAHGFGYMKSELFGLA*

BS20993.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:04:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG30338-PA 288 CG30338-PA 1..288 1..288 1492 100 Plus