BS21058.complete Sequence
1265 bp assembled on 2011-01-18
GenBank Submission: KX804548
> BS21058.complete
GAAGTTATCAGTCGACATGCGTCGGCAGCAGACAAGATATCGGAGTGATT
CCATCGCTAGTCCGTCGGGCTCCCGCAAGCCCTCCATTTCGGTGGCCACC
CCAACGCCGTTGGCCAGTGGATCCCCCACTCGCCGGGAGTCCCTGGTCAA
GCCCACCTGGCAGCACATCACACCCGGCCAGCTGCCACCCAAAACGCTGG
ACAAGATCAATGGCATTGCCTCGGACGATTCGGACGACGATGGCTATCCG
AAGAGGCGACCCAGCGTGATTGTCCACCAGCGCCAGCAGTCCATCTCCCA
GCAGCCTCTGCTGCCGGAATACATGACCTCAGCCTCCATATTCCGGGATC
ATGCTCCACAGACATCGCAATCGCAGTCGCAATCACATCATCTGCCATCT
GGCAATGGTTTCATGGCCCGATTGAATAGCGTACGGCTGGCCAGCGCGAC
GGAGCAACAGCCACTTCTGGATTCCGGAGGAGGAGTATCGGCAACTGCCG
TGGCCAGGCCACCTGTTGCACCGGCTCCAGTTGCTCCGGGACCGGGAAGC
GAGGGAGCCAGCGCAACGCTCTGCAAGAACGCTGGACGGGCACTCATCCG
CATGATTTCATCGAGCAAGGCTCCGGAGGAGGAAGACGAATTCGATATCA
TGGGCAAGGTCATAATGCTGGGCGATTCGGGAGTGGGCAAGACCTCACTT
TTGATCCGTTTCCGCGATGGTCGCTATGTGCCGAGCTATTTCCTCAGCAC
AGTTGGCATTGATTTTAGGAACAAAGTGGTGGTCGTCGATGGAACGCGCG
TCAAGCTGCAAATCTGGGACACAGCTGGTCAGGAGCGATTCCGGAGCGTT
ACCCACGCCTATTATCGCGACGCGCACGCTCTACTGCTGCTGTACGACGT
GACCAACAAGACCACCTATGACAACATTCGCGCCTGGCTGGGCGAGATCC
GGGAGTACGCGCAGGAGGACGTGGTCATCGTTTTAATAGGCAACAAGGCC
GACTGCAGCGGCAGCGAGCGGCAGGTGAAGCGGGAGGATGGGGAGCGTTT
GGGGCGGGAGCACAACGTGCCCTTCATGGAGACCTCGGCCAAGACGGGAC
TCAATGTGGAGCTGTCCTTCACAGCGGTGGCCAGGCAACTAAAGAGTCGC
GGCTACGAGCACGGCGATGATGGAAAGTTCAATGTGCATGATTTTGTGCG
TGACAATACAAAGGCGCGCTCGGTTTGCGCCCAGTGCAGGAACATGTAAA
AGCTTTCTAGACCAT
BS21058.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:17:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab26-RE | 1233 | CG34410-PE | 1..1233 | 17..1249 | 6165 | 100 | Plus |
| Rab26-RD | 1233 | CG34410-PD | 1..1233 | 17..1249 | 6165 | 100 | Plus |
| Rab26-RC | 1233 | CG34410-PC | 1..1233 | 17..1249 | 6165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:17:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab26-RE | 3311 | CG34410-RE | 1899..3131 | 17..1249 | 6165 | 100 | Plus |
| Rab26-RD | 1658 | CG34410-RD | 246..1478 | 17..1249 | 6165 | 100 | Plus |
| Rab26-RC | 2078 | CG34410-RC | 666..1898 | 17..1249 | 6165 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:17:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21327628..21328271 | 17..660 | 3220 | 100 | Plus |
| 3L | 28110227 | 3L | 21333348..21333495 | 988..1135 | 740 | 100 | Plus |
| 3L | 28110227 | 3L | 21333893..21334010 | 1132..1249 | 590 | 100 | Plus |
| 3L | 28110227 | 3L | 21329797..21329909 | 657..769 | 565 | 100 | Plus |
| 3L | 28110227 | 3L | 21333153..21333265 | 878..990 | 565 | 100 | Plus |
| 3L | 28110227 | 3L | 21332602..21332711 | 769..878 | 550 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:17:39 has no hits.
BS21058.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:39:52 Download gff for
BS21058.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab26-RD | 246..1476 | 17..1247 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:52:53 Download gff for
BS21058.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab26-RC | 666..1896 | 17..1247 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:00:43 Download gff for
BS21058.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab26-RC | 666..1896 | 17..1247 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:00:43 Download gff for
BS21058.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21333350..21333494 | 990..1134 | 100 | -> | Plus |
| 3L | 21333896..21334008 | 1135..1247 | 100 | | Plus |
| 3L | 21327628..21328269 | 17..658 | 100 | -> | Plus |
| 3L | 21329799..21329909 | 659..769 | 100 | -> | Plus |
| 3L | 21332603..21332711 | 770..878 | 100 | -> | Plus |
| 3L | 21333154..21333264 | 879..989 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:52:53 Download gff for
BS21058.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21320728..21321369 | 17..658 | 100 | -> | Plus |
| arm_3L | 21322899..21323009 | 659..769 | 100 | -> | Plus |
| arm_3L | 21325703..21325811 | 770..878 | 100 | -> | Plus |
| arm_3L | 21326254..21326364 | 879..989 | 100 | -> | Plus |
| arm_3L | 21326450..21326594 | 990..1134 | 100 | -> | Plus |
| arm_3L | 21326996..21327108 | 1135..1247 | 100 | | Plus |
BS21058.pep Sequence
Translation from 16 to 1248
> BS21058.pep
MRRQQTRYRSDSIASPSGSRKPSISVATPTPLASGSPTRRESLVKPTWQH
ITPGQLPPKTLDKINGIASDDSDDDGYPKRRPSVIVHQRQQSISQQPLLP
EYMTSASIFRDHAPQTSQSQSQSHHLPSGNGFMARLNSVRLASATEQQPL
LDSGGGVSATAVARPPVAPAPVAPGPGSEGASATLCKNAGRALIRMISSS
KAPEEEDEFDIMGKVIMLGDSGVGKTSLLIRFRDGRYVPSYFLSTVGIDF
RNKVVVVDGTRVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKTT
YDNIRAWLGEIREYAQEDVVIVLIGNKADCSGSERQVKREDGERLGREHN
VPFMETSAKTGLNVELSFTAVARQLKSRGYEHGDDGKFNVHDFVRDNTKA
RSVCAQCRNM*
BS21058.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:58:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab26-PE | 410 | CG34410-PE | 1..410 | 1..410 | 2116 | 100 | Plus |
| Rab26-PD | 410 | CG34410-PD | 1..410 | 1..410 | 2116 | 100 | Plus |
| Rab26-PC | 410 | CG34410-PC | 1..410 | 1..410 | 2116 | 100 | Plus |
| Rab26-PF | 373 | CG34410-PF | 1..373 | 1..410 | 1881 | 91 | Plus |
| Rab26-PG | 388 | CG34410-PG | 178..388 | 200..410 | 930 | 85.3 | Plus |
