BS21063.complete Sequence
869 bp assembled on 2011-01-18
GenBank Submission: KX805996
> BS21063.complete
GAAGTTATCAGTCGACATGTCGACGGAGAATTCGTTGGTTGAAATTCCAC
GCGGCGAATGGACTAAACTGCGAGATTTGTATGTGGCCAGAGATACGGAT
CCCCAAGGCTATCCGTGCATAAATAATTTCATTAAGTGGGTGGAGATAGA
CCCGCAATTGAAGGTCAATTTCCTATCGTTGAATGGCGACTGGCAGAGCG
ATGGAACCTTTGTTCTAACGCTACGTTCGGATACTCATATGAACCACATT
TACTTCAACACACTGAGCGAAAATTTGGATCGAGTGACGAAAGCGTTAGA
ATGCCTCAAGTCCATTGAGAATGAATACGATTTCTTTGGGTTTTCTACGC
GATTGAAACCTGTGGTGGAGTATATTGGCAACAAATATTATGCCAACAAG
AAGCTGCACACTGTGGATACCGTTTGGTACGCGGCCAGCAAAGAACTCGT
AGATACATTTAACATTCAGGTTCCTCCGGGCTTAAGTCTACAGCACTTGA
CCATCGAAGATGCCGAAATCATCAATGAAAACTGGCCACATAATAAACCC
GGCTCTATAGACTTTGTGAGAAGTTTAATTAAATATAATATTAATTTGGG
TGCTTATGACGACAAGGGAAAGTTGGTTGCCTGGTGTCTGCGATTGCCGA
TTGGATCCCTGGGTCTGCTGCAGGTTCTGGAGTCACATAAACGCCTTGGT
CTCGGCAGCTTGCTGGTGAAGTCGATGGCTAAGAAGATTTCCGCAGCGGG
AGATCAAGTTTTGGCGCCAGTAGTAACGAAGAACACCCCCTCGAGGAGCA
TGTTCGAGAAACTGGGTTTCCGTGCTATAGACAATACATACTGGGCTGCC
TAGAAGCTTTCTAGACCAT
BS21063.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:17:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12560-RB | 837 | CG12560-PB | 1..837 | 17..853 | 4185 | 100 | Plus |
| CG12560-RC | 819 | CG12560-PC | 1..819 | 17..853 | 3880 | 97.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:18:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12560-RB | 976 | CG12560-RB | 13..855 | 11..853 | 4200 | 99.9 | Plus |
| CG12560-RC | 977 | CG12560-RC | 13..837 | 11..853 | 3895 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:17:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8008947..8009196 | 469..220 | 1250 | 100 | Minus |
| 2L | 23513712 | 2L | 8008442..8008653 | 853..642 | 1060 | 100 | Minus |
| 2L | 23513712 | 2L | 8009249..8009465 | 227..11 | 1040 | 98.6 | Minus |
| 2L | 23513712 | 2L | 8008718..8008891 | 642..469 | 870 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:17:58 has no hits.
BS21063.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:39:54 Download gff for
BS21063.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12560-RB | 19..855 | 17..853 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:53:02 Download gff for
BS21063.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12560-RB | 19..855 | 17..853 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:00:51 Download gff for
BS21063.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12560-RB | 19..855 | 17..853 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:00:51 Download gff for
BS21063.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8008718..8008891 | 469..642 | 100 | <- | Minus |
| 2L | 8008948..8009195 | 221..468 | 100 | <- | Minus |
| 2L | 8009256..8009459 | 17..220 | 100 | | Minus |
| 2L | 8008442..8008652 | 643..853 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:53:02 Download gff for
BS21063.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8008718..8008891 | 469..642 | 100 | <- | Minus |
| arm_2L | 8008442..8008652 | 643..853 | 100 | <- | Minus |
| arm_2L | 8008948..8009195 | 221..468 | 100 | <- | Minus |
| arm_2L | 8009256..8009459 | 17..220 | 100 | | Minus |
BS21063.pep Sequence
Translation from 16 to 852
> BS21063.pep
MSTENSLVEIPRGEWTKLRDLYVARDTDPQGYPCINNFIKWVEIDPQLKV
NFLSLNGDWQSDGTFVLTLRSDTHMNHIYFNTLSENLDRVTKALECLKSI
ENEYDFFGFSTRLKPVVEYIGNKYYANKKLHTVDTVWYAASKELVDTFNI
QVPPGLSLQHLTIEDAEIINENWPHNKPGSIDFVRSLIKYNINLGAYDDK
GKLVAWCLRLPIGSLGLLQVLESHKRLGLGSLLVKSMAKKISAAGDQVLA
PVVTKNTPSRSMFEKLGFRAIDNTYWAA*
BS21063.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:58:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12560-PB | 278 | CG12560-PB | 1..278 | 1..278 | 1468 | 100 | Plus |
| CG12560-PC | 272 | CG12560-PC | 1..272 | 1..278 | 1414 | 97.5 | Plus |
| CG34010-PA | 278 | CG34010-PA | 6..272 | 10..277 | 396 | 32.5 | Plus |
| CG17681-PA | 293 | CG17681-PA | 33..277 | 31..277 | 348 | 33.6 | Plus |
| CG5783-PA | 287 | CG5783-PA | 29..271 | 30..276 | 302 | 31.3 | Plus |
