BS21065.complete Sequence
1061 bp assembled on 2011-01-18
GenBank Submission: KX805998
> BS21065.complete
GAAGTTATCAGTCGACATGCACTCCTTTGCCATTCTGATTCTGAGCCTGG
CCTCCGTGGGCCTGGCGACGCCATTGAGTAACACCTATCTGCCGCCGAAA
GTGGGCGCCCAGAGTGGATACAGTGCAGCGGCGTCCAGTTCCTCGGGATC
GTATGCAGCTCCAGCGGCCACCTATGCCCGCAGGTCCCACTCCGTGGCAG
CTCCTTCCAGGCAGTACCTAGCTCCGGCTTCATCGCATGGTAGCTACAGC
TCGGGTGGTTCCTCCTATGCCGCTCCATCTGTGTCCCATGTCTCGTATTC
CGCACCAGCTGCATCGGCATCAGCATCCCATGTCTCGTACTCGGCGCCAG
CTGCAGCCCACAGCTCATATGCCGCCCCATCCGTATCACATGGATCGTAC
TCCTCTGCTTCCCGCACCAGCTACTCAGCTCCCGTGGCTGCTCCATCCAG
GAAGTACCTGGCTCCAGCTGCAGTATCCCACAGCAGTTACTCCGCACCCG
TCGTTTCCCGCAAGAGCTATTCCGCTCCAGCCGTGTCGCATGGATCGTAC
TCCTCCTCGGGAGGTTCCAGTGGCTCCTACTCAGCTCCAGTTGCATCATA
TAGCTCCTATTCCGCTCCAGCTGCCTCCCACACTAGCTATTCCGCACCAG
TGGCCGCTCCTTCCAGGCAATATCTCGCTCCGGCTGCCTCATCCTACTCC
GCCCCAGCGGTATCATCCTACTCCGCACCAGCGGTATCATCCTACTCCGC
TCCAGCGGTCTCATCCTACTCCGCGCCAGCGGTATCCCACGGATCATCGT
ACTCCACCTCATCGCTATCCCATGGATCGTATGCCGCTCCATCGGTTTCC
AGCAAGACCTATGCCGCCCCAGCTGTCTCCCATGGCAGCTACTCGGGTTC
CAGCTCAGGATCAGGCCACGGATACGGATCTGGCTCCAGCCATGGATCGG
GAGTGCGTTCTGGCCACGGATCTAGCTTCGGATCTGGACACAAATCGGGT
TCCTACGCTGCCAATGGTGGCTACGAGTACCGCCTAAAGCATTGAAAGCT
TTCTAGACCAT
BS21065.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:18:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11585-RB | 1029 | CG11585-PB | 1..1029 | 17..1045 | 5130 | 99.9 | Plus |
| CG11585-RB | 1029 | CG11585-PB | 673..743 | 713..783 | 295 | 94.4 | Plus |
| CG11585-RB | 1029 | CG11585-PB | 697..767 | 689..759 | 295 | 94.4 | Plus |
| CG11585-RB | 1029 | CG11585-PB | 673..722 | 737..786 | 205 | 94 | Plus |
| CG11585-RB | 1029 | CG11585-PB | 721..770 | 689..738 | 205 | 94 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:18:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11585-RB | 1165 | CG11585-RB | 52..1080 | 17..1045 | 5130 | 99.9 | Plus |
| CG11585-RB | 1165 | CG11585-RB | 724..794 | 713..783 | 295 | 94.4 | Plus |
| CG11585-RB | 1165 | CG11585-RB | 748..818 | 689..759 | 295 | 94.4 | Plus |
| CG11585-RB | 1165 | CG11585-RB | 724..773 | 737..786 | 205 | 94 | Plus |
| CG11585-RB | 1165 | CG11585-RB | 772..821 | 689..738 | 205 | 94 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:18:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14189644..14190670 | 19..1045 | 5120 | 99.9 | Plus |
| X | 23542271 | X | 14190314..14190384 | 713..783 | 295 | 94.4 | Plus |
| X | 23542271 | X | 14190338..14190408 | 689..759 | 295 | 94.4 | Plus |
| X | 23542271 | X | 14190314..14190363 | 737..786 | 205 | 94 | Plus |
| X | 23542271 | X | 14190362..14190411 | 689..738 | 205 | 94 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:18:03 has no hits.
BS21065.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:39:55 Download gff for
BS21065.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11585-RB | 52..1079 | 17..1044 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:53:04 Download gff for
BS21065.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11585-RB | 52..1079 | 17..1044 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:00:52 Download gff for
BS21065.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11585-RB | 52..1079 | 17..1044 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:00:52 Download gff for
BS21065.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14189643..14190669 | 17..1044 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:53:04 Download gff for
BS21065.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14083676..14084702 | 17..1044 | 99 | | Plus |
BS21065.pep Sequence
Translation from 16 to 1044
> BS21065.pep
MHSFAILILSLASVGLATPLSNTYLPPKVGAQSGYSAAASSSSGSYAAPA
ATYARRSHSVAAPSRQYLAPASSHGSYSSGGSSYAAPSVSHVSYSAPAAS
ASASHVSYSAPAAAHSSYAAPSVSHGSYSSASRTSYSAPVAAPSRKYLAP
AAVSHSSYSAPVVSRKSYSAPAVSHGSYSSSGGSSGSYSAPVASYSSYSA
PAASHTSYSAPVAAPSRQYLAPAASSYSAPAVSSYSAPAVSSYSAPAVSS
YSAPAVSHGSSYSTSSLSHGSYAAPSVSSKTYAAPAVSHGSYSGSSSGSG
HGYGSGSSHGSGVRSGHGSSFGSGHKSGSYAANGGYEYRLKH*
BS21065.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:59:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11585-PB | 342 | CG11585-PB | 1..342 | 1..342 | 1712 | 100 | Plus |
| Vml-PB | 578 | CG34333-PB | 189..547 | 12..332 | 466 | 45.6 | Plus |
| Vml-PA | 578 | CG34333-PA | 189..547 | 12..332 | 466 | 45.6 | Plus |
| Vml-PB | 578 | CG34333-PB | 109..455 | 12..336 | 457 | 45 | Plus |
| Vml-PA | 578 | CG34333-PA | 109..455 | 12..336 | 457 | 45 | Plus |
| CG32603-PA | 345 | CG32603-PA | 1..339 | 1..311 | 451 | 41.9 | Plus |
| Vml-PB | 578 | CG34333-PB | 81..431 | 8..338 | 445 | 44.8 | Plus |
| Vml-PA | 578 | CG34333-PA | 81..431 | 8..338 | 445 | 44.8 | Plus |
| Muc91C-PB | 949 | CG7709-PB | 258..615 | 13..338 | 442 | 39.6 | Plus |
| Vml-PB | 578 | CG34333-PB | 157..507 | 12..336 | 441 | 46.2 | Plus |
| Vml-PA | 578 | CG34333-PA | 157..507 | 12..336 | 441 | 46.2 | Plus |
| Vml-PB | 578 | CG34333-PB | 51..335 | 21..338 | 424 | 47.7 | Plus |
| Vml-PA | 578 | CG34333-PA | 51..335 | 21..338 | 424 | 47.7 | Plus |
| Vml-PB | 578 | CG34333-PB | 281..549 | 10..293 | 354 | 43.2 | Plus |
| Vml-PA | 578 | CG34333-PA | 281..549 | 10..293 | 354 | 43.2 | Plus |
| Vml-PB | 578 | CG34333-PB | 313..566 | 10..256 | 270 | 39.9 | Plus |
| Vml-PA | 578 | CG34333-PA | 313..566 | 10..256 | 270 | 39.9 | Plus |
| Vml-PB | 578 | CG34333-PB | 49..225 | 163..338 | 247 | 44.9 | Plus |
| Vml-PA | 578 | CG34333-PA | 49..225 | 163..338 | 247 | 44.9 | Plus |
| Vml-PB | 578 | CG34333-PB | 387..576 | 12..178 | 165 | 38.3 | Plus |
| Vml-PA | 578 | CG34333-PA | 387..576 | 12..178 | 165 | 38.3 | Plus |
