BS21066.complete Sequence
905 bp assembled on 2011-01-18
GenBank Submission: KX800290
> BS21066.complete
GAAGTTATCAGGCGACATGGATTCGTCTGAAAGCCAATCGCAAATGGATG
ACCAAGATGCTCGCATACTGCGTCTGCAAAATCTGATCGAAAAGAATATT
GAGATAGAGCAACAAATCGAAAACAACACCATCGGAGAGTCTATCACGGC
CATAGAGGAAATCATTCAGACAGCCAACGATATCAGCAAGGGACATGAAG
ACCGCCGTACAAACTCCACGGAACTTGTCCTGGACACGGAGCTACTGCGT
CGCAATTTCGAAGTTGTGGGAAAAGCTATCCAACATAACACCAACGTCAC
GGATCGAATGGTGGCCACGGCGATCAACGATTTGGTTTTCAAAGAGAGCG
AAGAAGATTGGGATGCTCTTTGTTCATTGGCTATTCAGTTCGGAAGACCA
CTCTTCACCAATGATAGCATGCTGCCCTTCATAGATGTTACTCCAAAGGT
GGTGGTTCAAAAGCAACGTGCTCCTCGCAAAACGAAATCTCAAGTAGATG
AGAAGCGTCCAGAAAAGAGTGACCAATTGGAACGCAAGGACGAAGGAGCA
GCGTCCGTAACCCACATGCTGAAGCAAATAAGACAAATATATCGAGATGG
CAATCAAGAGCCGATTCCGTACTTTAAACTGATTTGCAATCCAAACAATT
TTATGGACACCGTTCAGAACGCTTTGCAACTGTCGTTTCTTGTCAAGGAG
AACTATATTTCCATCGAAAATGGCGAGGATGGTTTGCCATTGGTTCGCGT
TGTGAATTCCAAATCGGTCGAAGGAAACGCACCGTCCCAGGCTATTTGTT
CCATCGATGTTACCTTTTGTGAGAAAATGGTAAAGCACTACAACCTACAT
GAGCCAATGTTAAAAAGACTTCCGGTTAGTGAGAAATAGAAGCTTTCTAG
ACCAT
BS21066.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:18:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nse4-RC | 873 | CG13142-PC | 1..873 | 17..889 | 4365 | 100 | Plus |
Nse4-RB | 873 | CG13142-PB | 1..873 | 17..889 | 4365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:18:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nse4-RC | 1029 | CG13142-RC | 90..963 | 17..890 | 4370 | 100 | Plus |
Nse4-RB | 1383 | CG13142-RB | 90..963 | 17..890 | 4370 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:18:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10440176..10440505 | 494..823 | 1650 | 100 | Plus |
2L | 23513712 | 2L | 10439669..10439888 | 106..325 | 1100 | 100 | Plus |
2L | 23513712 | 2L | 10439945..10440115 | 326..496 | 855 | 100 | Plus |
2L | 23513712 | 2L | 10439529..10439619 | 17..107 | 455 | 100 | Plus |
2L | 23513712 | 2L | 10440559..10440627 | 822..890 | 345 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:18:08 has no hits.
BS21066.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:39:55 Download gff for
BS21066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13142-RC | 90..956 | 17..883 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:53:05 Download gff for
BS21066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13142-RB | 90..956 | 17..883 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:00:54 Download gff for
BS21066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nse4-RB | 90..956 | 17..883 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:00:54 Download gff for
BS21066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10439529..10439619 | 17..107 | 100 | -> | Plus |
2L | 10439671..10439888 | 108..325 | 100 | -> | Plus |
2L | 10439945..10440112 | 326..493 | 100 | -> | Plus |
2L | 10440176..10440505 | 494..823 | 100 | -> | Plus |
2L | 10440561..10440620 | 824..883 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:53:05 Download gff for
BS21066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10439529..10439619 | 17..107 | 100 | -> | Plus |
arm_2L | 10439671..10439888 | 108..325 | 100 | -> | Plus |
arm_2L | 10439945..10440112 | 326..493 | 100 | -> | Plus |
arm_2L | 10440176..10440505 | 494..823 | 100 | -> | Plus |
arm_2L | 10440561..10440620 | 824..883 | 100 | | Plus |
BS21066.pep Sequence
Translation from 16 to 888
> BS21066.pep
MDSSESQSQMDDQDARILRLQNLIEKNIEIEQQIENNTIGESITAIEEII
QTANDISKGHEDRRTNSTELVLDTELLRRNFEVVGKAIQHNTNVTDRMVA
TAINDLVFKESEEDWDALCSLAIQFGRPLFTNDSMLPFIDVTPKVVVQKQ
RAPRKTKSQVDEKRPEKSDQLERKDEGAASVTHMLKQIRQIYRDGNQEPI
PYFKLICNPNNFMDTVQNALQLSFLVKENYISIENGEDGLPLVRVVNSKS
VEGNAPSQAICSIDVTFCEKMVKHYNLHEPMLKRLPVSEK*
BS21066.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:59:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nse4-PC | 290 | CG13142-PC | 1..290 | 1..290 | 1477 | 100 | Plus |
Nse4-PB | 290 | CG13142-PB | 1..290 | 1..290 | 1477 | 100 | Plus |