BS21078.complete Sequence
785 bp assembled on 2011-01-18
GenBank Submission: KX805278
> BS21078.complete
GAAGTTATCAGTCGACATGACTTTCAAGAAAATACTATTTGTGTGCATGG
GCAACTCGTGCAGCTCTCCGATGGCCGAGGTGATTATGCAGAATCTGATG
GTCAAGACGAGTCTCTACTGGGAGGTGGATAGTGCCGGTCTGAGGACATG
GAACACTGGACGGCGACCGAACAAGCGATGCCTGCAAATTCTGCGAGAGC
ACGGACTGCGATCCGATCACTTTTGTCGTCAGTTCACCGTGAATGATTTT
CTGTACTTTGATTATGTTGTGGCAATGGATGAGGCCGTGTTCAAAGAACT
GCTCCTCTGGGCTGCGGACAACAGGGCTGGCAAACACTGTCAGGTACTTC
TTCTGAGTTCGTTTGGCAAGAATGGACTGCCGGCCTTTATAGACAGCCTA
TCCCCAACCCACAAGCTAAAGAACTTTCGATCCGCCTATTACCAAATCAA
AGAGTGCTGCAAGCAGCTCATCCTTAGCCAAAAAGTGGACATTGTCAAGT
ACGAGCTACCCAGCACTGATGATGATGAGCTCTACTACTCTGGCAAGGAT
AATGCGCCGCAGGACTCGGCCAAGGCGAATCACTTGACGGAAACAAGCCA
TAACAACAGTGGCATATATCTGCTAAACACGGAGATAAGATCCTCCGGTG
GACTGATGTCCTCGTCGACCGACCCATCCAACTCGAAGACCTCGATGCCA
TCCTGCAGCCAAGGAGTGCAGCGAAAACTGTGCCAGAAATGTGGACAGAA
ATTTCTGGCTGCCCTTTAGAAGCTTTCTAGACCAT
BS21078.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:04:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14297-RA | 753 | CG14297-PA | 1..753 | 17..769 | 3765 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:04:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14297-RA | 1032 | CG14297-RA | 173..925 | 17..769 | 3765 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:04:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18898873..18899235 | 407..769 | 1815 | 100 | Plus |
| 3R | 32079331 | 3R | 18898393..18898575 | 50..232 | 915 | 100 | Plus |
| 3R | 32079331 | 3R | 18898635..18898810 | 231..406 | 880 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:04:33 has no hits.
BS21078.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:38:15 Download gff for
BS21078.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14297-RA | 173..925 | 17..769 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:47:12 Download gff for
BS21078.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14297-RA | 173..925 | 17..769 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:55:45 Download gff for
BS21078.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14297-RA | 173..925 | 17..769 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:55:45 Download gff for
BS21078.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18898293..18898326 | 17..50 | 100 | -> | Plus |
| 3R | 18898394..18898575 | 51..232 | 100 | -> | Plus |
| 3R | 18898637..18898810 | 233..406 | 100 | -> | Plus |
| 3R | 18898873..18899235 | 407..769 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:47:12 Download gff for
BS21078.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14724015..14724048 | 17..50 | 100 | -> | Plus |
| arm_3R | 14724116..14724297 | 51..232 | 100 | -> | Plus |
| arm_3R | 14724359..14724532 | 233..406 | 100 | -> | Plus |
| arm_3R | 14724595..14724957 | 407..769 | 100 | | Plus |
BS21078.pep Sequence
Translation from 16 to 768
> BS21078.pep
MTFKKILFVCMGNSCSSPMAEVIMQNLMVKTSLYWEVDSAGLRTWNTGRR
PNKRCLQILREHGLRSDHFCRQFTVNDFLYFDYVVAMDEAVFKELLLWAA
DNRAGKHCQVLLLSSFGKNGLPAFIDSLSPTHKLKNFRSAYYQIKECCKQ
LILSQKVDIVKYELPSTDDDELYYSGKDNAPQDSAKANHLTETSHNNSGI
YLLNTEIRSSGGLMSSSTDPSNSKTSMPSCSQGVQRKLCQKCGQKFLAAL
*
BS21078.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:59:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14297-PA | 250 | CG14297-PA | 1..250 | 1..250 | 1322 | 100 | Plus |
| CG31469-PA | 164 | CG31469-PA | 2..164 | 5..166 | 305 | 40.5 | Plus |
| primo-1-PB | 155 | CG33748-PB | 3..145 | 4..148 | 227 | 34.9 | Plus |
| primo-1-PA | 155 | CG33748-PA | 3..145 | 4..148 | 227 | 34.9 | Plus |
| primo-2-PC | 164 | CG33747-PC | 10..155 | 6..152 | 209 | 31.5 | Plus |
