BS21090.complete Sequence
1061 bp assembled on 2011-01-18
GenBank Submission: KX805177
> BS21090.complete
GAAGTTATCAGTCGACATGAGCTGCTTTGGCTGCGGTCGCAAATATGGCC
TATTCTGCAAGGAGTATGGATGCCCCAACTGCGGCTACTCATTCTGCTCC
AAGTGCTTGAAGAGACCAATGCCCGTGCCCCGTCATGCAGGAAAGGTGCA
CAATGTGTGCCTCATATGCTACGACAAACTATCCAAACTCCAGGCGAGCG
CCGATGCCGAGAAAGTTATAGACTGTGATGCTTTGCCGGGGATCTTAGTC
ACCAAAATGAACCTGGCTCCTCCATCCAAAAGTTCAGATGGCGCCGATGC
CCTATTCAACGACAGCCTGCCTGTGGAGGAGCTGCCACAGGCATTGGTTC
CCAGTTCCAGTTCGTCACCACATTCCAAAGATCACAAGGATCATATTGAT
GAGAACCTGGACAGTGAGTTGACCAAACGAATGCAGGACTATAAACGAGT
TGATGCCACCGATGATGAGATCCGCACCCGTCTGGCCAATCTCACTGGGA
TGCCGCATACGAAAAGCTACGATAAGAAAGATCTGCTACTGTCCACCGAC
CAAAGAAACGATCAGGAGAAAATGAGGGACTTGCTCGCACAATTCGTTGA
CGAAGCCCAACTGGATCAAAATATCAGCAGGCAGAGGGATGACTCAATTT
CCGACATTGAGAGACGTCTGCGAGCTCTGCGCGATACACCCGTCGATTCC
GATGCATGCCCATCGAGATCCCAGATGGAAAGTATCGCGGACAACGAAGA
GGATGACGAGACACTTCTACAGAACATATTGAAAAAGTATGTAGCAGAAT
CGCGCTTACCAGAACCTTCCGAGAGTGAAATTAGTCCAATTAACACTGAG
TCGCCCGGCAACACCGAAGAATTGCCCTGGTGCAATATTTGTAACGAAGA
CGCCGACTTCCGATGCCACGGATGTGGTGGGGAACTCTTTTGCACTCTAT
GCTATAAGGAGTGCCACGATGATGACGAGGAGTACCGTGCTCACGTTAAG
GAAAAGTATTCGGCTCCGCCAAAGCTTAAAGAAAATCACTTCTAAAAGCT
TTCTAGACCAT
BS21090.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:04:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15602-RB | 1029 | CG15602-PB | 1..1029 | 17..1045 | 5145 | 100 | Plus |
| CG15602-RA | 1029 | CG15602-PA | 1..1029 | 17..1045 | 5145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:04:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15602-RB | 1342 | CG15602-RB | 249..1277 | 17..1045 | 5145 | 100 | Plus |
| CG15602-RA | 1172 | CG15602-RA | 79..1107 | 17..1045 | 5145 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:04:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15800096..15800573 | 310..787 | 2390 | 100 | Plus |
| X | 23542271 | X | 15800637..15800896 | 786..1045 | 1300 | 100 | Plus |
| X | 23542271 | X | 15799791..15800037 | 63..309 | 1235 | 100 | Plus |
| X | 23542271 | X | 15799674..15799721 | 17..64 | 240 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 16:04:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Stalker2 | 7672 | Stalker2 STALKER2 7672bp | 1781..1824 | 1000..957 | 112 | 72.7 | Minus |
BS21090.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:38:18 Download gff for
BS21090.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15602-RA | 79..1105 | 17..1043 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:47:22 Download gff for
BS21090.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15602-RA | 79..1105 | 17..1043 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:55:54 Download gff for
BS21090.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15602-RA | 79..1105 | 17..1043 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:55:54 Download gff for
BS21090.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15799674..15799721 | 17..64 | 100 | -> | Plus |
| X | 15799793..15800037 | 65..309 | 100 | -> | Plus |
| X | 15800096..15800573 | 310..787 | 100 | -> | Plus |
| X | 15800639..15800894 | 788..1043 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:47:22 Download gff for
BS21090.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15693707..15693754 | 17..64 | 100 | -> | Plus |
| arm_X | 15693826..15694070 | 65..309 | 100 | -> | Plus |
| arm_X | 15694129..15694606 | 310..787 | 100 | -> | Plus |
| arm_X | 15694672..15694927 | 788..1043 | 100 | | Plus |
BS21090.pep Sequence
Translation from 16 to 1044
> BS21090.pep
MSCFGCGRKYGLFCKEYGCPNCGYSFCSKCLKRPMPVPRHAGKVHNVCLI
CYDKLSKLQASADAEKVIDCDALPGILVTKMNLAPPSKSSDGADALFNDS
LPVEELPQALVPSSSSSPHSKDHKDHIDENLDSELTKRMQDYKRVDATDD
EIRTRLANLTGMPHTKSYDKKDLLLSTDQRNDQEKMRDLLAQFVDEAQLD
QNISRQRDDSISDIERRLRALRDTPVDSDACPSRSQMESIADNEEDDETL
LQNILKKYVAESRLPEPSESEISPINTESPGNTEELPWCNICNEDADFRC
HGCGGELFCTLCYKECHDDDEEYRAHVKEKYSAPPKLKENHF*
BS21090.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:59:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15602-PB | 342 | CG15602-PB | 1..342 | 1..342 | 1844 | 100 | Plus |
| CG15602-PA | 342 | CG15602-PA | 1..342 | 1..342 | 1844 | 100 | Plus |
