BS21103.complete Sequence
1172 bp assembled on 2011-01-18
GenBank Submission: KX801586
> BS21103.complete
GAAGTTATCAGTCGACATGTACGTGCTCCTGCTAATCCTTTTAGGAATCT
CACGCTACAGGGCTCAGAAAAATTCACAATTGCCAGATGAACTTTACGCA
GCCATCGTGAACAGCTTTTCGAACAGGAACATTATGTTCTCGACGGAGAT
GATACGATCCAGCATGCTGTTCATCTATGTGGGCGTGGAGGAAGATGAAT
CCGAGCAAATTCGAAAGGCTATGCACTATCGAGGAACCCATCTATCTGAA
TACAAGCCGAAAACACAGAAAATCTTTGCCATGAGTGTGAAGAAGGCACC
TGTGGCCAAGAGTCTTACCCGATTCTATGTACGTCAGAATATGAAAATGT
CCACGGAATATAGAGTTTTTATGCGGCATACAGAGGGAAGAGCTCGTAAT
ATCGCCTTTGCTCGTGAACAGCTAGACGAGGTTAATACATTTTACAGCCA
TGAAATGGGCGAGCAAATTGGGCAGGTGGTAAAAGAAAGCTGGTGGAAAC
CGAACAGCCAAGGACTTCTCGTAAATGCCATTTTCTTCAATTTGAGTTGG
GAGCGGACATTCAATCCGGAGGCCACATATCCCCGGGAGTTTCGAGTAAA
TGCCACAAAGAGCGTTATGATACCCATGATGCACGAGGATAGTAAGTTTG
CATTTGGCATCCTAGGGAATCTTAAAGCCACCGCCGTCCTGGTGCCTTTT
TCCCATGGAGATCTCCGAATGCTCTTGATAAAGCCCGATCAGCCTGATGG
ACTTGCTGCCTTGCAAATGAAGCTGCAGGCCATGAATATCTTAAGCGTTG
CCAGGAACCTCACTATGATGGATGTGTTTGTGGGTATACCGAAATTTAAG
ATACACAGTGATCTAGAACTCTCTCCAGCTTTTGAAAAGATGGGCATCAA
GGATATATTTAAGCCCAGCAAGTCATTTTCAACGTTGCTTCACAGGAATA
CCAACTTTCGGATTGACGGAGTTATTCATGTAGTCACCTTTGAGTTTCAG
GAGCAGGGCATTGGTACGCCAAGTACAGATGTTGGCAATGGTAGTTTGAC
ACACACCTTTAATGGGGTGAAATATTTTTTGGCTACTCATCCATTTGCTT
TTTATATCATAGACAACACATCAATATATTTTGCCGGTCATGTAACAAGC
TTTTAGAAGCTTTCTAGACCAT
BS21103.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:07:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn53F-RB | 1140 | CG10956-PB | 1..1140 | 17..1156 | 5685 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:07:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn53F-RB | 1279 | CG10956-RB | 11..1152 | 17..1158 | 5695 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:07:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17123209..17124227 | 1035..17 | 5080 | 99.9 | Minus |
| 2R | 25286936 | 2R | 17123025..17123149 | 1158..1034 | 625 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:07:31 has no hits.
BS21103.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:38:35 Download gff for
BS21103.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn53F-RB | 11..1150 | 17..1156 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:48:22 Download gff for
BS21103.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn53F-RB | 11..1150 | 17..1156 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:56:48 Download gff for
BS21103.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn53F-RB | 11..1150 | 17..1156 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:56:48 Download gff for
BS21103.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17123027..17123148 | 1035..1156 | 100 | <- | Minus |
| 2R | 17123210..17124227 | 17..1034 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:48:22 Download gff for
BS21103.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13010532..13010653 | 1035..1156 | 100 | <- | Minus |
| arm_2R | 13010715..13011732 | 17..1034 | 99 | | Minus |
BS21103.pep Sequence
Translation from 16 to 1155
> BS21103.pep
MYVLLLILLGISRYRAQKNSQLPDELYAAIVNSFSNRNIMFSTEMIRSSM
LFIYVGVEEDESEQIRKAMHYRGTHLSEYKPKTQKIFAMSVKKAPVAKSL
TRFYVRQNMKMSTEYRVFMRHTEGRARNIAFAREQLDEVNTFYSHEMGEQ
IGQVVKESWWKPNSQGLLVNAIFFNLSWERTFNPEATYPREFRVNATKSV
MIPMMHEDSKFAFGILGNLKATAVLVPFSHGDLRMLLIKPDQPDGLAALQ
MKLQAMNILSVARNLTMMDVFVGIPKFKIHSDLELSPAFEKMGIKDIFKP
SKSFSTLLHRNTNFRIDGVIHVVTFEFQEQGIGTPSTDVGNGSLTHTFNG
VKYFLATHPFAFYIIDNTSIYFAGHVTSF*
BS21103.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:00:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn53F-PB | 379 | CG10956-PB | 1..379 | 1..379 | 1953 | 100 | Plus |
| Spn42De-PB | 386 | CG9460-PB | 15..384 | 20..377 | 419 | 28.6 | Plus |
| Spn42De-PA | 404 | CG9460-PA | 33..402 | 20..377 | 419 | 28.6 | Plus |
| Spn43Aa-PA | 390 | CG12172-PA | 33..390 | 25..379 | 387 | 27.5 | Plus |
| Spn55B-PA | 374 | CG10913-PA | 9..368 | 16..374 | 377 | 25.8 | Plus |
